G324085


Basic Information

Item Value
gene id G324085
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 438391 ~ 442287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383942
AGGATGGTGGGGTCCCATTgggtggtgcattgtgggatatccAGCCCCAGGGTGCATACCTGGAGGGGGGATATGAGATGGGGGCGGAGCACCGTGAGGAGGAGGCGGAGCTCCATGTCCTGGGGGTGGGGCCCCGTGTTGAGAGGGCGGAGCTAGCTGTCCGTGCTGAGCCGCGGCCGCCGCTGCTGCCTGTTGCTCCATCTGCTGACGTGCTTTCATCTCCGCATACTTCAGCTGCTCCATGTGGAACGCCTGCCTCTCCGTCAGCAACTGCTGCCTCTGCAACTCCAGCCTCTTTCTCTCGGTCCATGATGGTCTCCAGCTCCTCGAAGTGACGTAGTTTAATCTCCAACTTCTTCATCTGCGTCTCCACCAGCAGCGCCACCAGAGACTTGATCTTCCTCTCCTCCACCGCTGCCAAGTGcttAGCCTTGGTGGCAGCGGAGGCGAGCGCGGCAGCCGCAGCGGTGGCGATGTTTCCCTCTCCGATATCAAGCTCCAGCTTCTTCTTGCCCTCCTCCGTCGTCGTCTCTTCtccctcctttcctccctccGTCACCTCCATcgcctcctccttctctttctCATCAGCAGCACTCGCTTCATTCGTCTCTCCTCCGTcaccctcctcttcctcaccctCGGGTTTCTCCGCCGCTtcacttttcactttctctccctccGCTGGTTTCTCTGCTGCCTCACTCGCTTTCTCCGTCTCGTCCTTAGACTCCGTCTTCTCTCCCTGCTGAGACTCGGAATCTGTTTCCATCTTCTCTGATTCTGTGGTTTCGGTTTTCTCCGGCTCGTCCGGCGCCGTTCCCGCGATGCCGCTGCTCTCCAGGCCGTAGGACGGGTCGACTTTCCCCGTGCTCCTCGCT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383942 True 881 TUCP 0.60 6 438391 442287

Neighbor

gene id symbol gene type direction distance location
dpy19l1l dpy19l1 coding upstream 87842 333684 ~ 350549 (+)
zgc:114181 LOC108261199 coding upstream 206897 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 323245 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 330593 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 342663 77198 ~ 95728 (+)
LOC117595771 NA coding downstream 13229 455516 ~ 456979 (+)
LOC113524801 NA coding downstream 17926 460213 ~ 466623 (+)
ppox ppox coding downstream 27669 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 63027 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 208631 650918 ~ 657392 (+)
G324083 NA non-coding upstream 581 365488 ~ 437810 (+)
G324089 NA non-coding upstream 77326 359123 ~ 361065 (+)
G324064 NA non-coding upstream 83088 326531 ~ 355303 (+)
G324082 NA non-coding upstream 105590 331923 ~ 332801 (+)
LOC113523709 NA non-coding upstream 203560 233614 ~ 234831 (+)
G324116 smarcc1 non-coding downstream 2490 444777 ~ 446125 (+)
G324139 NA non-coding downstream 101581 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 110436 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding downstream 113510 555797 ~ 556519 (+)
G324151 NA non-coding downstream 130719 573006 ~ 575138 (+)
G324067 NA other upstream 26282 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 110452 240370 ~ 327939 (+)
G324068 NA other upstream 145803 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 244546 182467 ~ 193845 (+)
nod1 nod1 other upstream 402619 25296 ~ 35772 (+)
G324120 NA other downstream 12623 454910 ~ 466625 (+)
G324143 NA other downstream 115128 557415 ~ 558139 (+)
G324123 NA other downstream 124915 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 165325 607612 ~ 610009 (+)
G324206 NA other downstream 303386 745673 ~ 748475 (+)

Expression


Co-expression Network