G324120


Basic Information

Item Value
gene id G324120
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 454910 ~ 466625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383992
CAGGAAGTGAATTCCTGATGACACGAATAAATCATAATAGATGTATAAAAATGTCAGTTTGATAGGTTGTaacgttgttgttttttttaaatagatctGGATTGTCTAAGAATATATTTGAATGCGTCACAAGTTCACCTATATTCGAATATTATATAGACTCAAGACTTTTTGTAGTCCTTTTCACAAACTACGTGTCCCATAAAGCAACGCAGGTTCGTCTGGATAAATTAGAGACCGCCATCTCATCCGGGTATTTACGCTGTAGCAACGGATACACAGCTaattagtgtttatttaaatacatacacTTATTTCTAacttatgtatttattcattcatttatatctgtctgtctgtaatcCGCACTGCATGTACAGTATGAAAAAGCAGAACTACGGCTATAAACATGTCTAAAGAGCGACATCTAGTGGACAAAACAGTCAACAAAACATCGCTGGTACTTTAACCGCCTGCAATAGCTGCTTTTGTCCACTAGATGTCTCTGTAAACTAGTTTAAAGCCGCAGCTCTGCTTTAATTGTCACCCCTGATTGATAAGCGCACCAATCAGCTGCAGCTGCTCATTATTTCAGTGGAGATTGTGAACCaatcaaaatgtttaaagacgACTCCTGTTAAAGGAAGCCTCATGGGCCTTCAGGGTGTGTCGACTGGAAAGACATGAGGTTCTGTTTTGGAGTGAAGACTGCAGGCAGCATGAAGGAGTTGATCTTTGGTGTGTTCTTGGTTACAATGGGAGTCTTCTCTCAAAGTTGGGCGATTCTACTCCCTTTAGGTCTTCCAGTGGAAAtttgTTACACTCAGTGGTTTGACCGTGACAATCCTAGTGGATTAGGAGATTATGAAACACTCGACCAGCTGAGAGCAGAATATCCAGGGACAATCTGTCCCAAGCCTTTAACCATTGAAGCTCAGACTGTCTCTGGTACTCCAGCCTCAAGCACTGGACAAGTGTTTCAATActacAACACGGTGTATGGCTTTGCCTGTGTGAATTCTCAGCAGAAATTGGGAAGTTGTCTGGATTATAAGGTGCGTTTTAGGTGCCCGTGTCTTGACCTTGAGGTTCTCTGATCAACCTGTGGCTTGAGTTAAACGTGTTGACCTTCAGGCATCTTATTGCAACCTTGTTAATTCGTGTTGCTTCCTGTCTCTTAACTCAAATGTGTCGACTGGAAAGATATGAGGTTCTGTTTTGGAGTGAAGACTGCAGGCAGCATGAAGGAGTTGATCTTTGGTGTGTTCTTGGTTACAATGGGAGTCTTCTCTCAAAGTTGGGCGATTCCACCTCCAGGTCTTCCAGTGAAACtttgTTACACTCAGTGGTTTGACCGTGACAATCCTAGTGGATTAGGAGATTATGAAACACTCGACCAGCTGAGGGCGGAATATCCAGGGACAATCTGTCCCAAGCCTTTAACCATTGAAGCTCAGACTGTCTCTGGTACTCCAGCCTCAAGCACTGGACAAGTGTTTCAATActacGACACGGTGTATGGCTTCGCCTGTGTGAATTCTCAGCAGAGGAGGAGAAGCTGTCTGGATTATGAGGTGCGTTTTGGATGCCGGTGTCCTTGGCCCCGAGGTTCGCTGGTCAACCTGTGACTCGAGTGAACGTGTTGCCCTTTGTTTCTTCAGGCATCTTATTGTAACATTGCTAATTCCTATCGCTTCATGTGTCTCTTAACTCAAATGTGTATTAGGAATATGTACAGAATGAAAACTCTTTTGAAGAGTAATCACATGAGCAATTTGTATGCCCTGTAATGAGaaactgaatgaataaaaaaaaaatgttcagtccTGC
>TU383993
CAGGAAGTGAATTCCTGATGACACGAATAAATCATAATAGATGTATAAAAATGTCAGTTTGATAGGTTGTaacgttgttgttttttttaaatagatctGGATTGTCTAAGAATATATTTGAATGCGTCACAAGTTCACCTATATTCGAATATTATATAGACTCAAGACTTTTTGTAGTCCTTTTCACAAACTACGTGTCCCATAAAGCAACGCAGGTTCGTCTGGATAAATTAGAGACCGCCATCTCATCCGGGTATTTACGCTGTAGCAACGGATACACAGCTaattagtgtttatttaaatacatacacTTATTTCTAacttatgtatttattcattcatttatatctgtctgtctgtaatcCGCACTGCATGTACAGTATGAAAAAGCAGAACTACGGCTATAAACATGTCTAAAGAGCGACATCTAGTGGACAAAACAGTCAACAAAACATCGCTGGTACTTTAACCGCCTGCAATAGCTGCTTTTGTCCACTAGATGTCTCTGTAAACTAGTTTAAAGCCGCAGCTCTGCTTTAATTGTCACCCCTGATTGATAAGCGCACCAATCAGCTGCAGCTGCTCATTATTTCAGTGGAGATTGTGAACCaatcaaaatgtttaaagacgACTCCTGTTAAAGGAAGCCTCATGGGCCTTCAGGGTGTGTCGACTGGAAAGACATGAGGTTCTGTTTTGGAGTGAAGACTGCAGGCAGCATGAAGGAGTTGATCTTTGGTGTGTTCTTGGTTACAATGGGAGTCTTCTCTCAAAGTTGGGCGATTCCACCTCCAGGTCTTCCAGTGAAACtttgTTACACTCAGTGGTTTGACCGTGACAATCCTAGTGGATTAGGAGATTATGAAACACTCGACCAGCTGAGGGCGGAATATCCAGGGACAATCTGTCCCAAGCCTTTAACCATTGAAGCTCAGACTGTCTCTGGTACTCCAGCCTCAAGCACTGGACAAGTGTTTCAATActacGACACGGTGTATGGCTTCGCCTGTGTGAATTCTCAGCAGAGGAGGAGAAGCTGTCTGGATTATGAGGTGCGTTTTGGATGCCGGTGTCCTTGGCCCCGAGGTTCGCTGGTCAACCTGTGACTCGAGTGAACGTGTTGCCCTTTGTTTCTTCAGGCATCTTATTGTAACATTGCTAATTCCTATCGCTTCATGTGTCTCTTAACTCAAATGTGTATTAGGAATATGTACAGAATGAAAACTCTTTTGAAGAGTAATCACATGAGCAATTTGTATGCCCTGTAATGAGaaactgaatgaataaaaaaaaaatgttcagtccTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383992 True 1830 TUCP 0.42 12 454910 466625
TU383993 False 1308 TUCP 0.41 6 454910 466625

Neighbor

gene id symbol gene type direction distance location
dpy19l1l dpy19l1 coding upstream 104361 333684 ~ 350549 (+)
zgc:114181 LOC108261199 coding upstream 223416 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 339764 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 347112 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 359182 77198 ~ 95728 (+)
ppox ppox coding downstream 3331 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 38689 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 184293 650918 ~ 657392 (+)
pycard NA coding downstream 191856 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 208243 674868 ~ 680370 (+)
G324116 smarcc1 non-coding upstream 8785 444777 ~ 446125 (+)
G324083 NA non-coding upstream 17100 365488 ~ 437810 (+)
G324089 NA non-coding upstream 93845 359123 ~ 361065 (+)
G324064 NA non-coding upstream 99607 326531 ~ 355303 (+)
G324082 NA non-coding upstream 122109 331923 ~ 332801 (+)
G324139 NA non-coding downstream 77243 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 86098 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding downstream 89172 555797 ~ 556519 (+)
G324151 NA non-coding downstream 106381 573006 ~ 575138 (+)
G324125 NA non-coding downstream 118554 585179 ~ 588909 (+)
G324085 NA other upstream 12623 438391 ~ 442287 (+)
G324067 NA other upstream 42801 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 126971 240370 ~ 327939 (+)
G324068 NA other upstream 162322 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 261065 182467 ~ 193845 (+)
G324143 NA other downstream 90790 557415 ~ 558139 (+)
G324123 NA other downstream 100577 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 140987 607612 ~ 610009 (+)
G324206 NA other downstream 279048 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 307664 774289 ~ 806528 (+)

Expression


Co-expression Network