G324123


Basic Information

Item Value
gene id G324123
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 567202 ~ 635045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384002
ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgatctcactcacacacactcacacacactcacacacacacacacacacactctttctctctgtgatgAACTCTGAGCTCTATAAGCCACTGATGCCACAACCGACTTCCTGTTCAATGAGTTTCATATCAGTCAGGGTTGCTGTGAAACCAAACATACAACTGaagcaaacacaaaacacacaacctgctacaccatatacacaacctgctacacaaaacacacaacctactacatcaaacacacaacctgctacaccatatacacaacctgctacacaaaacacacaacctactacatcaaac
>TU384003
ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgatctctcacacacacactcacacacactcacacacactcacacacactcacacacactcacacactcacacggcTGGAGAAAGCAGAAAGCAGTGTGTTTCAGTCGGTGGTCAAAGCTGGAGGATCAGCGGGAACAGAAAAACGTCCAAACGCAAATTTACACCGCTGCGTCTTCATTTCTTCTGTTTAGGAGGCGGCctgaagagaaaacacacacgaGGGTTAGCTTCAGGGggtaaaaaacacaaaataaagtgtttaaatataataaaatatacgtTTAACTTCACCAGaggcacctttttttttgacGGTCAGATAGAATTACAGATAGCAAAGTTTGAAAAACTGACAAGTTCAAGTGACATGTTATctggggtgcacaaacttttgcactcaac
>TU384004
ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgatctcacacactcacacacacactcacacacacacacacacacactcacacacactcacacacactcacacacactcacacggcTGGAGAAAGCAGAAAGCAGTGTGTTTCAGTCGGTGGTCAAAGCTGGAGGATCAGCGGGAACAGAAAAACGTCCAAACGCAAATTTACACCGCTGCGTCTTCATTTCTTCTGTTTAGGAGGCGGCctgaagagaaaacacacacgaGGGTTAGCTTCAGGGggtaaaaaacacaaaataaagtgtttaaatataataaaatatacgtTTAACTTCACCAGaggcacctttttttttgacGGTCAGATAGAATTACAGATAGCAAAGTTTGAAAAACTGACAAGTTCAAGTGACATGTTATctggggtgcacaaacttttgcactcaac
>TU384008
acaccacacacacacacaccacacacacacacacacacacacacacacacagtacaccaTATTACACTCTTATTACCATTTCATAACGGTGGATCGACCATTTTTTCACACGTGTGTGCACAGATGAGTGTCGAGGTTCAGCTGGAATaatatcatattaataaaatgctgaaaaacgCAACAAGCCGATGCAATGTGATGGATGACATGCAACACTGCAGCTttacatgaatgtgtgtgtgtgtgtgtaaatgtgtgtgtgtgtgtgtgtgtgtgtattagggtATTAGGGTATTAAGAAGAGGGTTtaaaccctgaaaaaaaaaataaaggatggaataaaaatgtttcaagtCATGAATGTTAATAAAGAAACGATATTAGTGTAAAAGATAAAGCATCATCATGATGACGGGGTTTTGTGCATGCAGTATGCacgctgctctctctctcacacacacacacacacacacacacacacacacagatttgtgaTAGATCTTTAATAATCAGACCACAGTTAGACGTTAGACGTGATGCAAAAAATCCGTCCGATAACGAAGCATTGCGATGTGTCCGGATGCGGGCTGGAAACACACCTGAATACCTGCTGCATTGCATTTGAACTGCATTCTCACCCTAAGCGTTTATACTACGTTTATTAACATGCAGAATGAGCATGATTGGTGAGATGGTTAGGCGTTTCAAAGAAAGCAGCTCCTCACTGACCGGCctgtacatcatcatcatcatcatcatcatcaccaccatcaccaccaccatcacctccaccaccaccaccaccatcatcatcatcatcatcacatgcATGGAGACGGACAGCAGTGCTGGTGCTGCAGTGCACATTTAGGCTGTAAAATGGGTGTGTTAGAGGAGCTAGAGGAGCAAAGACACTGAAATGAAGCATGAAGATACAACATGTGAATACAACATGTTATTCAGTGCACTTCAGGGAGGTGACATGCAGCGGAAAGGCAGCGCTGCAGATGCAAAGATGGGGCTCAAAAGAAGCACAATGACATGAATTTGACtctatgaataaatatataaatatataaatacatataaatagatatatatTAGTTGTATGTGTTTGGATCATACCTCAGGCGGCGGCGGTTCGTTCCCAGGTTccagaaacagcagcagcagcagcagcagaagcagaagaagcagcagaagcagcagccaTTAGCAGCGGCGTTAGATCTGCTTCACCTCCGTCCTAAAGCTCCACAGAAACCCCGCGGAAAACCGGCTGAAAAATCGGGACCCCCCTCCCCCCCGACACCGACACCGACTCCGACACCGACTCCGACTCCCCTCTACACCCTCCTCTACACCCTCTACACGGGTGCCACTGGTTATCaattttcctgttttcaaaatacaaaaccaaaaataatgATGATCTTTCTTTTCAGTGAGAAAATCCGTCGGTCCCGGTTTCTGTCgctgaggtgaaaaaaaaaaaaaagatgctaaaGTCCGAAATAGTCCCCGGGTTTGTTTCTTTGCTAGCCGCTTGCcgccttttctctctctcttttttttccttttatcccCTCAGAAAACAGCTGATATATACGTAAAATCACTAGGACACGTCTTCGATGTGTGTCtgggtgttatttatttattttggtggtggtgttgatcTTCGTTTCCCCTCCAGAGAGACAAATCTTGTGGCTGTTCCTTTGCTGGCTAAGCGCTAGCTCTCTCCGGCTAAGGCTAAGCTAGTTTGCATCGCCTGCCATCGGTTTGGTCTGATTGTTGCCTGTTGTGGTGCAGCCTGAG
>TU384011
ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgatctcacacactcacacacactcacacacactcacacacactcacacacactcacacacactcacacactcacacggcTGGAGAAAGCAGAAAGCAGTGTGTTTCAGTCGGTGGTCAAAGCTGGAGGATCAGCGGGAACAGAAAAACGTCCAAACGCAAATTTACACCGCTGCGTCTTCATTTCTTCTGTTTAGGAGGCGGCctgaagagaaaacacacacgaGGGTTAGCTTCAGGGggtaaaaaacacaaaataaagtgtttaaatataataaaatatacgtTTAACTTCACCAGaggcacctttttttttgacGGTCAGATAGAATTACAGATAGCAAAGTTTGAAAAACTGACAAGTTCAAGTGACATGTTATctggggtgcacaaacttttgcactcaac
>TU384014
acaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacactcacacacacacacacacacacacacactcacacacactcacacacactcacacacactcacacacactcacacacactcacacactcacacggcTGGAGAAAGCAGAAAGCAGTGTGTTTCAGTCGGTGGTCAAAGCTGGAGGATCAGCGGGAACAGAAAAACGTCCAAACGCAAATTTACACCGCTGCGTCTTCATTTCTTCTGTTTAGGAGGCGGCctgaagagaaaacacacacgaGGGTTAGCTTCAGGGggtaaaaaacacaaaataaagtgtttaaatataataaaatatacgtTTAACTTCACCAGaggcacctttttttttgacGGTCAGATAGAATTACAGATAGCAAAGTTTGAAAAACTGACAAGTTCAAGTGACATGTTATctggggtgcacaaacttttgcactcaac
>TU384015
ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgaacacacacactcacacacactcacacacactcacacacacacacacacacactctttctctctgtgatgAACTCTGAGCTCTATAAGCCACTGATGCCACAACCGACTTCCTGTTCAATGAGTTTCATATCAGTCAGGGTTGCTGTGAAACCAAACATACAACTGaagcaaacacaaaacacacaacctgctacaccatatacacaacctgctacacaaaacacacaacctactacatcaaacacacaacctgctacaccatatacacaacctgctacacaaaacacacaacctactacatcaaac
>TU384016
ctaAAGGtgtttgaaattatttaattaaaaaaaaaaaaaccaaacatcaGTCTGTACAGTCACATGACCAACAGAaatctacatttttctttttccccctagACATAATTTTGGATATCAAAGAAAGCAGAAAGATGCTGAAAAGCAAATCGTTcacaaaaagtaaaacaaacttttcatggtttaatatactataatacacaGTAAGAACTTCCTGATCGAGTCACGCCGCTGATTACGCTAACGATTAGCACAGAGAGAGCCGAGTTACTGAAACAGCACAGgataataaaacactgatgtaCTGTGGAAGTTCTTCACCTCCAGcgatctcacacactcacacacacactcacacacacacacacacacactcacacacactcacacacactcacacacactcacacacacactcacacacactcacacacactcacacacactcacacacactcacacactcacacggcTGGAGAAAGCAGAAAGCAGTGTGTTTCAGTCGGTGGTCAAAGCTGGAGGATCAGCGGGAACAGAAAAACGTCCAAACGCAAATTTACACCGCTGCGTCTTCATTTCTTCTGTTTAGGAGGCGGCctgaagagaaaacacacacgaGGGTTAGCTTCAGGGggtaaaaaacacaaaataaagtgtttaaatataataaaatatacgtTTAACTTCACCAGaggcacctttttttttgacGGTCAGATAGAATTACAGATAGCAAAGTTTGAAAAACTGACAAGTTCAAGTGACATGTTATctggggtgcacaaacttttgcactcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384002 False 632 lncRNA 0.39 2 606086 635045
TU384003 False 730 TUCP 0.39 3 606086 606914
TU384004 False 740 lncRNA 0.39 3 606086 606914
TU384008 True 1821 lncRNA 0.45 2 567202 591598
TU384011 False 734 lncRNA 0.39 3 606086 606914
TU384014 False 566 lncRNA 0.45 4 567202 606914
TU384015 False 636 lncRNA 0.39 2 606086 635045
TU384016 False 800 lncRNA 0.40 2 606086 606914

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 43045 505314 ~ 524157 (+)
ppox ppox coding upstream 83904 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 100579 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 110223 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 216653 333684 ~ 350549 (+)
etsrp LOC108256243 coding downstream 15873 650918 ~ 657392 (+)
pycard NA coding downstream 23436 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 39823 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 84344 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 171596 806641 ~ 816145 (+)
G324140 LOC106578455,LOC103388722 non-coding upstream 10084 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding upstream 10683 555797 ~ 556519 (+)
G324139 NA non-coding upstream 18919 543868 ~ 548283 (+)
G324116 smarcc1 non-coding upstream 121077 444777 ~ 446125 (+)
G324083 NA non-coding upstream 129392 365488 ~ 437810 (+)
G324197 NA non-coding downstream 78350 713395 ~ 713801 (+)
G324216 NA non-coding downstream 114406 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 675866 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 694602 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 704483 1339528 ~ 1368639 (+)
G324143 NA other upstream 9063 557415 ~ 558139 (+)
G324120 NA other upstream 100577 454910 ~ 466625 (+)
G324085 NA other upstream 124915 438391 ~ 442287 (+)
G324067 NA other upstream 155093 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 239263 240370 ~ 327939 (+)
G324206 NA other downstream 110628 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 139244 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 321539 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 483223 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1264581 1899626 ~ 1919710 (+)

Expression


Co-expression Network