G324125


Basic Information

Item Value
gene id G324125
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 585179 ~ 588909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384020
gagagacagacagagagagagagacagaaagagagagagacagaaagagagagagacagaccttGCACATTCCTGATGGTTTCCTCCCGAGCCAAAGTCTGTGTCTGAATATCTCTAACTCTCTCTGTACAGCAGGTGAAAGCAGCTCGCTACAGGAGCAGTGTGTCTGAATTCTCAGTATTTCATAAAACAGTAGGCGAGAAAAACCCTGATGATCTACTGCTTCCGCCGAGATTCTGCAGTATGGAAGCACCAGACGCTGCGCTATCCCATAATGCACCGGGGCTGGCGCGGAAGAGCCATCAGCGTCAAAAACGGCGGCGCATCGGCTCTTTTTAAGCGTCGGTGCTGTCGGTATGAAACGGTGTTCCTTGTGGTTAAACCGTACTTGTGTAACACCACCTGAGTAAACTGTTAAGAAAAAATACAGGTGCTCTGATCTAATCTGGCGAGCTCTTTAAGTTTTAGCCGTTACTATGACAtcgtaggtcacatgacctggtATGTCCAGATCGTATTCATACTACGCACGTGTACTGATCAGTACGCACGGAATCGAATGCCGTGTCACAGTACGTGAGTTCGGACGCAGCCAGAGACGTCTGTAGAGATAACTTCCCTCCATGACCGAGTGTGTGTTCGTCTGGCGcttgttgatgatgtcatccaGCAGAACAGCAGGCTGACGAAAAACACTGTCCTAATTATCAGACTAGCGAACTTATCGCTTTTGCTCTTTCGTTATGTCGCGTGCGCTTCTCCTAGCGAACTCTGAGGAAGGATTGGGACACAGccgaatattattattataataacgtGAGCCGTGCTGAGGGAGCAGTTAGCCTTTAGCACTGCTTTAGCACTCACTGCTAACCAAACCACACACTCCTCACTTCACAGAGTGCATCATGGGTAGTCTTTATCATCTGGACACTACATAccgcagtgcattatgggtaaattCACGACTATTGGAATGATCTCTGATATAAATCGTAGTTTaaagtgaaattttggacacacacacacacacacacgtacacacttaCACGCCTTATAAGGTTAAtttgcaacaacaacaacaacgtcgAGTTTGATCCTGATTTAATCTAAAGCTGTTGTGCTAACGCTCGGAGTGTCCCGGAGAACGTAGCCGAACGTTAGCTATCTACACTACGTTTTATGCCATTGCTTTTCAAACCTTACATCTGTAACATCtgcatttttgtataaaaacaaaacaaaacagctaaGCTGAGATTTTTTTAGCTGTGATGTGCTAAAGATTAGCACATCTTTATAGACCGTTCTTCGAGTTAAagtatattaaacaaaatggttagcattagcaacaGACAATGCTAATGCATTTgacatgctaatgctaacagaGAATGACGGAATGCTAACGGGCGATACTTATTTACTCGACTCTACAATGCTAATCGTGCTAACTGCAAGTTCCACTTTAAATAATCTTTTAACGAAGTGTTTAATTTAACAGAAAACTCTTAAGCAAACTATCCATGACTTCTGTTGTagtgcacaaagtattggcacccctctaccATGTTATTCTCCATACAGTGGTGacactgacgtgtgtgtgtgtgtgtgtgttagaaatgtCGCGGACTGTTTGTTGAGGCTTTGACACTTCTTACTGGTTctcataaatattattttacctcagaaatgcaagtgcatttttattaaatataaagactATAGAGACTATAACACCTGTTAATTACCAGTTAATAAACTTTCTTGTTCATCTACTTCAATTATTTTCACACACGTTTCtcttgtgtacatttttttgataaaatatcctgttaaaatatattttaatgacttaaaataaaaataaacatgagtGTGTTTAAAATTTTCAGCACGATCGCAAAGAGCTctgaatttaatttatatagcgAGACTGTAAAACACAGCGCATTCACCGAAGTTATTAACCGAAAAAATCataaaggattttaaaaaatttagattttaaaaacaaagctcATCATGGATCATCCACACGTAcggacatttttaaaagtgtagatttttctgtgttttggcTTTCTGTACTTTTTTGGGTCGCTAAAAATCAAGCTGTCGGAAAACGTTGATGTCACAGCGTGAACCTGTGCGCTGCGTGTGTTTCGCACGTGTTAGGAACATGCTACGACTGCGTTCATCACGGCTGCTGATCAGGTCGTTACGTTCTgctctgtaatttcttatttaacGTCTTTCTAGGCTACGTccacattatttcattattagacagaaaaactgcattttcgtTTTAAAACGCTTTTCATCTACACTGGCGTTTTCAAACGTTTTCCAAAAACACTTACATCCCTTTACTGCGCATGCGTAAAAAAGCGAAGACGCTTTGGCCTCGCGTCATTTCTGTCAGGCGTTTATTTACGTTCTGTCTGTTTGAATCGAAGCAGCGACGTCGAGGAAAAGCAGCGAGTTTTTAAACGGACTGACGAAGAGCTGAAGAGTTGTATGTgattaaatgtgtttgttttgagttgattgtgtcacatgactaaaaatacatcACTGTTTGTGAACATCTCCGTTTTTCTCCATCCACACGACAACACGCAAACGGCGTTTTTGAAAAGCTCCGTATTCtctggacaaaaaaaacgcCATCTCAGTGGGAACGTAGAGAAAAAGATGCGTTTTCAAATTCCTCCGGATTAACGTGAACACAGCCTTAgtttaatttcactttgtttttgcGGTTCTTCTGGCCCGCTTCTGAGCGAAATCTGAATCGACTCGGCTTcagaagtgaatcaaacatgacGTGGaccaaaaaagagaaaataaacgtTTTAAACTACTTATTTATATAACCATCTAATCGGGCTCTGTGTTCTCTGGTGATTTCTGTTAATTCTTCACACAGGTTTGTTTGGATTGCTCtgttactgtatttataaatacaaataaaagatttttacgAGGACGTCGTCGACAGTACGCATTCCTCAGCCGACCTTTTTGCTGATTTTTGGAGcaattaattatgtaaatttaaaaaaaccaaacaaaccacAAAGCAAAAGAAGCAAAGGAGACGATTTCTCTCCGATTCTGAATCGACAATCGGAATAATCAGCATGAAAGAGCTCTACAGCATTCTCCCGAccgaacataaaaaaaataaataagaaatctCGGACCAATCTTACTCAGAATTCCTGACCTTCAACTACGAAgagttgaataaaaaaataaaaaagcacccCCTAAACTTTTATAATTCCAGCTCAGAAAATCCGGAAGCTCTCCTCAGGCCTGAGTTTAGTgcgtgatgtcaaatcaacatggctgcacgGCGTCATCGGTAAATAAATCACTACTTTTAAACAAGATTATAGTCAGATTTGTTTTAGatcaatccacacacacacacacacgagatgATTCATTAAATCTGTAACGCTGACCAACAGTTAACACTCTAACGTTAGCTTGTTGCTAGTTCTCGAGCGCTTGATGATCAGACAGCAAACAGAAGTCACGCtttcatggaggcgtccatgttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384020 True 3583 lncRNA 0.40 2 585179 588909

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 61022 505314 ~ 524157 (+)
ppox ppox coding upstream 101881 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 118556 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 128200 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 234630 333684 ~ 350549 (+)
etsrp LOC108256243 coding downstream 62009 650918 ~ 657392 (+)
pycard NA coding downstream 69572 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 85959 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 130480 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 217732 806641 ~ 816145 (+)
G324151 NA non-coding upstream 10041 573006 ~ 575138 (+)
G324140 LOC106578455,LOC103388722 non-coding upstream 28061 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding upstream 28660 555797 ~ 556519 (+)
G324139 NA non-coding upstream 36896 543868 ~ 548283 (+)
G324116 smarcc1 non-coding upstream 139054 444777 ~ 446125 (+)
G324156 alkbh8 non-coding downstream 9501 598410 ~ 599170 (+)
G324160 NA non-coding downstream 18136 607045 ~ 607543 (+)
G324197 NA non-coding downstream 124486 713395 ~ 713801 (+)
G324216 NA non-coding downstream 160542 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 722002 1310911 ~ 1315115 (+)
G324143 NA other upstream 27040 557415 ~ 558139 (+)
G324120 NA other upstream 118554 454910 ~ 466625 (+)
G324085 NA other upstream 142892 438391 ~ 442287 (+)
G324067 NA other upstream 173070 354781 ~ 412109 (+)
G324068 NA other upstream 292591 241197 ~ 292588 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 18703 607612 ~ 610009 (+)
G324206 NA other downstream 156764 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 185380 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 367675 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 529359 1118268 ~ 1163614 (+)

Expression


Co-expression Network