G324140 (LOC106578455,LOC103388722)


Basic Information

Item Value
gene id G324140
gene name LOC106578455,LOC103388722
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 552723 ~ 557118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384043
GACACGGAgctggtggtggaggtggagtgGCTGTGGTCCATGGCCgggctggtggaggtggagctGCTGGTGTTTGTTCCCTCGTCTGTGGTCTTTTTGAAGAAGTTGTGCTGCAGGGCGTAGAACGGCGTGATGCGCGTTTTGGGGTCGTAGTCCAGCATGCGCAGGATCAGGTCCTTAAACTTCAGGTAATCGCAAGGGGCGTGGCCTTGCTCCCCGGCCCGCCTTCCCCCGGGACCCCCGGTCTCCACCCCCAAAATCTCATGGAGACGCCGCGTTGCAGGAGGCTTATACTccttctttatgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384043 True 308 lncRNA 0.60 2 552723 557118

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 28566 505314 ~ 524157 (+)
ppox ppox coding upstream 69425 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 86100 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 95744 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 202174 333684 ~ 350549 (+)
etsrp LOC108256243 coding downstream 93800 650918 ~ 657392 (+)
pycard NA coding downstream 101363 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 117750 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 162271 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 249523 806641 ~ 816145 (+)
G324139 NA non-coding upstream 4440 543868 ~ 548283 (+)
G324116 smarcc1 non-coding upstream 106598 444777 ~ 446125 (+)
G324083 NA non-coding upstream 114913 365488 ~ 437810 (+)
G324089 NA non-coding upstream 191658 359123 ~ 361065 (+)
G324064 NA non-coding upstream 197420 326531 ~ 355303 (+)
G324151 NA non-coding downstream 15888 573006 ~ 575138 (+)
G324125 NA non-coding downstream 28061 585179 ~ 588909 (+)
G324156 alkbh8 non-coding downstream 41292 598410 ~ 599170 (+)
G324160 NA non-coding downstream 49927 607045 ~ 607543 (+)
G324197 NA non-coding downstream 156277 713395 ~ 713801 (+)
G324120 NA other upstream 86098 454910 ~ 466625 (+)
G324085 NA other upstream 110436 438391 ~ 442287 (+)
G324067 NA other upstream 140614 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 224784 240370 ~ 327939 (+)
G324143 NA other downstream 297 557415 ~ 558139 (+)
G324123 NA other downstream 10084 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 50494 607612 ~ 610009 (+)
G324206 NA other downstream 188555 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 217171 774289 ~ 806528 (+)

Expression


Co-expression Network