G324142 (dyrk1b,LOC102785375)


Basic Information

Item Value
gene id G324142
gene name dyrk1b,LOC102785375
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 555797 ~ 556519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384045
TAGATTTTAAGCATGCGAAAGAGGAAATAAATCAGTTTCAGAAATCTGCAGGAACACTTTTCGTCCACTTGGGGGCAGCACAACCtgagtgcgagtgtgtgttaaagaggaTGTCTTTACTAATAAGCCCTTAAAGGCAGCAGTGAGTCTTTTTCTCCAGCAGGAGGCAGCAGaaactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagaggatAAATCAGGAGCTGATGATGGGAAATCATTACTGGAGTTAAATATCGCATCAGGGAAAGAGAATGTTTTTGGTTGggataactgtgtgtgcgtgtgtgtgcgtgtgtctcaCCCTCTGCCCGAGCTGACAGGAGCTGCCGAAGTCGACGATCTTGATGGCGCTGCGTTTGGGGTTACACAGCAGGATGTTCTCGGGCTTCAGGTCGCAGTGGATGATGCTGAGCTCGGGCGTGGCCAGGAAGAGCAGCGCCGTGCACAGCTGCTGAGCGAACTTCCGCGTCAGGTTGAGCGACACGCCGCGGAAATTAGTGTTACGCAGCAGATCGTACAGGTTATAGGAGAGCAgctcaaacaccaaacacaggTGATTACGGAACATGAAGTGCCGCTTCAGgtggactgagagagagagagagagagagagaga

Function

symbol description
dyrk1b Predicted to enable protein serine/threonine kinase activity and transcription coactivator activity. Acts upstream of or within endoderm formation. Predicted to be active in nucleus. Is expressed in head and somite. Human ortholog(s) of this gene implicated in abdominal obesity-metabolic syndrome 3. Orthologous to human DYRK1B (dual specificity tyrosine phosphorylation regulated kinase 1B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384045 True 675 lncRNA 0.50 2 555797 556519

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 31640 505314 ~ 524157 (+)
ppox ppox coding upstream 72499 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 89174 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 98818 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 205248 333684 ~ 350549 (+)
etsrp LOC108256243 coding downstream 94399 650918 ~ 657392 (+)
pycard NA coding downstream 101962 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 118349 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 162870 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 250122 806641 ~ 816145 (+)
G324139 NA non-coding upstream 7514 543868 ~ 548283 (+)
G324116 smarcc1 non-coding upstream 109672 444777 ~ 446125 (+)
G324083 NA non-coding upstream 117987 365488 ~ 437810 (+)
G324089 NA non-coding upstream 194732 359123 ~ 361065 (+)
G324082 NA non-coding upstream 222996 331923 ~ 332801 (+)
G324151 NA non-coding downstream 16487 573006 ~ 575138 (+)
G324125 NA non-coding downstream 28660 585179 ~ 588909 (+)
G324156 alkbh8 non-coding downstream 41891 598410 ~ 599170 (+)
G324160 NA non-coding downstream 50526 607045 ~ 607543 (+)
G324197 NA non-coding downstream 156876 713395 ~ 713801 (+)
G324120 NA other upstream 89172 454910 ~ 466625 (+)
G324085 NA other upstream 113510 438391 ~ 442287 (+)
G324067 NA other upstream 143688 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 227858 240370 ~ 327939 (+)
G324143 NA other downstream 896 557415 ~ 558139 (+)
G324123 NA other downstream 10683 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 51093 607612 ~ 610009 (+)
G324206 NA other downstream 189154 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 217770 774289 ~ 806528 (+)

Expression


Co-expression Network