G324151


Basic Information

Item Value
gene id G324151
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 573006 ~ 575138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384054
GTACTGCTTAAAACGTAGCACTTCATCGTTTTTCACGTTATCACAATAGTAACTACACATTAATCGCTATGTGTTCTTTATAAGCATCAGCGTAAACCTAAATTGATTTCATTCTACTTTTGCGCTCTTGGTGTGCCATCAACTGAACTACCTTACGCCAGTGAGTTACGTTACacttaagctagctagctaaatgtaaCCATGACGACGATCTAGAGACATTCCTAACGTACACCAGTGCATGAACGGTACAGCAGGATGACAGCGATCATTTGCAGCGCTAACCAGGCCCGTGCGGCCAAAATGCGAGTGAAAACAGAGGGCGTACTAACTTTTGGACGGCTTCCGGAGCAGGTGCGACTGCGGTACGTAGCGACTCTGATCCGAGTTGCCGATCCAGGAGTCGGTCGACAGGTTGGCGACCATTCTGTTAGAAGGCTGCGGCTTCTCCTCCACGGATGAAGTGATCACCATCGGAAAGGCTTTTGTGTGGAGCTCCTTCGAAGAATTACATCAAtcaagtttgtttgttttttaattaaagaaaataaaacgaCGAAACAATCACTTTTAGGGGGGGAAAGTCGTCAGGATAATCCCGTCCACGTGCTCGGATGAATCTTCGATACGAGTGTACGTATATCCGATAGCGCTGGATTCGAACTGAAAGTCAGTGATGACAGAAGTATTCCTCGATCGAGAGCCAATTCCTGAAGTGACGACACAGATGAACgaaaaaaaaaggcaccatTCGTTTTCTCCCAACGCTGTTTCCGTGCTCTGTCCGTGCTTTTCTCTTTATTACGGTAAATCTAAGGCAATGGATTGGGCTTTTAGGCAACGATGctcataaaaaatataatatacttaTTCATATTCAAACTACGACTCTGcaatatatatatctatatcatatacatatacatatatactctGTTACATATATAGTCTATATATCTATTTATAACTATAATCTAcgtatatatttctatatatatatttctctgaTGGTAAGGGGATGAAATTATTTGGTTACTAAAGTTAGCTTTGCTTGCATTGTAGCTAGTTTTATCTTCGTCCTCCAGTACTGAGGAATCCAGTTGAAGACCAGTTTTGACGCTGGTCAGTTTTCCAGTCCGGATATCGGAGCAGCTGAAGCTGGGAGTGCTGGTGTGCTCAAGATGGGGGTAAGGGGGTGGGTGTCTTCATTTCCAACGCCAATTACCCCATCACTATCCCTAAAAATAGCAAGGGTTTCTTAGGATCCGCGTGTTGCACCCTACTGAGTTAGTGAGTCCAAAGGGCAGATGGATGGCCTCGTCCCTCGGGGGTTTAACCTTGCAGCTTTAATCCTGATAGGCGGCGAGGCGAGGCAAGGCGAGGCGAAGCGAAGCGAAGGGGCGCTGTTATAGTCTACACAAAGTCCAAACCAAACGTTCAGAGATGTCCAAAAGGAGACCGAGAGTGTCAAACCCACAGCCGTGTATCGTAATCaggggtttttatttatttatttttttgtgcacGCGCACAAACAATGAAGTAAAgcaaagtgcacaagtgcaagtTCAGTTACAGGCACTACAAGACTAATATTTAAGGGGAGAAACGATCTTGCTGATCCGTCTCTGTCCATTCCAAGATGGGTTGCGAAgtgttgaaagaaagaaaaacaattccTGAAAACTTTAAATGAGAATTTCACTGAGAACGCAGTGAAGAGCCTCACGTCATTTAACACAGGGCTTCAAATGATCTTGTGCTCTTGCTTGTATAGAATAATCCACGATCCAGATCTTCTTCTCTAAGAGTGATAGATGTTCAGAGTTTCACTCCAAGCTGTGCAGAGTCCATCCTGATCACTCCACACTTCCATCCTGAGCAGTCTCAGAGTGCTTCTCTGGTCTCATCCACAGCTTCAGTACGCACTTCTTCTCCGTCTCCCAGCTCTCGGAGCCTCTTATTCCACCCCAGGACACCTTCCTGGATCTCTCTAGATGATGCAGattgtttataggaattttttttcccctcttctccGTCGAGCTTGTTTTTCCTTCACAGCCAGGCTTAACTTGGCGTAATCATTATTCCTTGTTGTCTATAAGCTG

Function

NR:

description
PREDICTED: leucine-zipper-like transcriptional regulator 1

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU384054 True 2111 lncRNA 0.44 2 573006 575138

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 48849 505314 ~ 524157 (+)
ppox ppox coding upstream 89708 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 106383 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 116027 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 222457 333684 ~ 350549 (+)
etsrp LOC108256243 coding downstream 75780 650918 ~ 657392 (+)
pycard NA coding downstream 83343 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 99730 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 144251 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 231503 806641 ~ 816145 (+)
G324140 LOC106578455,LOC103388722 non-coding upstream 15888 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding upstream 16487 555797 ~ 556519 (+)
G324139 NA non-coding upstream 24723 543868 ~ 548283 (+)
G324116 smarcc1 non-coding upstream 126881 444777 ~ 446125 (+)
G324083 NA non-coding upstream 135196 365488 ~ 437810 (+)
G324125 NA non-coding downstream 10041 585179 ~ 588909 (+)
G324156 alkbh8 non-coding downstream 23272 598410 ~ 599170 (+)
G324160 NA non-coding downstream 31907 607045 ~ 607543 (+)
G324197 NA non-coding downstream 138257 713395 ~ 713801 (+)
G324216 NA non-coding downstream 174313 749451 ~ 753443 (+)
G324143 NA other upstream 14867 557415 ~ 558139 (+)
G324120 NA other upstream 106381 454910 ~ 466625 (+)
G324085 NA other upstream 130719 438391 ~ 442287 (+)
G324067 NA other upstream 160897 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 245067 240370 ~ 327939 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 32474 607612 ~ 610009 (+)
G324206 NA other downstream 170535 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 199151 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 381446 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 543130 1118268 ~ 1163614 (+)

Expression


Co-expression Network