G324161 (fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489)


Basic Information

Item Value
gene id G324161
gene name fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 607612 ~ 610009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384064
cacacacacaacactgcaaaaactaCCTATGCCTCCTAGTGGACATATCTGGAACTGCAGTAACAAACACAATGAATggttatgtattttattttatactttacatAAATTGGTGTGTTTTGCTgcttcactctgtgtgtgttattattataattttgtttttaaagtgagaaagtttatcatttttatgaaaGACACTCACCAACCAGCATGCGGTATTTGTGCGGATGTCTGGCGTCTTCAATAATGGGAATAATGTTGGTTCTCTTTTTAGCCACGTTCAGTAAATCTCGGCCGGAGCGGTGAGAAAACTCCACTGCGTACACCAAAccttcGGGTCCGACGATGTCGGAGACGTGAGACACGGTGGTTCCCGACGCCGCTCCCAGGTACATGACTTTGGCTCCGGGTTTGATGTGGATCTGATCGACTCCTCCCAGAATCGCCGCCGCTAGCTTGGAGCGGAACGGGTTCCACGCCCTGTACTCGATCTTCGTCTCTCCGTCCTCGACGCTGATTCTCTTCTCGCCGTACACGGACTCTCCCACCACCATGTTCTTCGTCACCAGGGCGTCTTCCTTCCCACGGCAGATAAACACCCCTTCGTGTCTGTGCGGCTCCACCGTCACTTTCCTTCCTCCTCTAaaccctcctcttcctcctgctcctctgcCTCCGCGTCCCCTCGGCGTCCCTCTGCCTCCACCACGGCCCCGGAATCCTCCGTCACCACCCGGAGACCTAAAACCTCCACCTCCACCACCTCGTCCTCCTCTAAACCCGCCGCGTCCTCCTCTGTCTCCGCCGCGTCCTCGTCCGCCGAATCCAC
>TU384065
cacacacacaacactgcaaaaactaCCTATGCCTCCTAGTGGACATATCTGGAACTGCAGTAACAAACACAATGAATggttatgtattttattttatactttacatAAATTGGTGTGTTTTGCTgcttcactctgtgtgtgttattattataattttgtttttaaagtgagaaagtttatcatttttatgaaaGACACTCACCAACCAGCATGCGGTATTTGTGCGGATGTCTGGCGTCTTCAATAATGGGAATAATGTTGGTTCTCTTTTTAGCCACGTTCAGTAAATCTCGGCCGGAGCGGTGAGAAAACTCCACTGCGTACACCAAAccttcGGGTCCGACGATGTCGGAGACGTGAGACACGGTGGTTCCCGACGCCGCTCCCAGGTACATGACTTTGGCTCCGGGTTTGATGTGGATCTGATCGACTCCTCCCAGAATCGCCGCCGCTAGCTTGGAGCGGAACGGGTTCCACGCCCTGTACTCGATCTTCGTCTCTCCGTCCTGCgagacaaaaacaacacacgGCATTTCAAATCTCGTCAAGGTGACATCACGGAGCAGCCGGAAATCATGATTATACGCTGATTTACAGCGACACGAGACAGAGCGATCGTTAGAGCCGCTAAGTGGGCGGGGCAAagtctttatgcaaatgagaacaGAAGCGATGTTAGGACTTCATTCAGCGAGACTCAGTGTTCGATttacaggaaataaaacagCGGGAGTATTTTCTCCGTTCTTCTTTTATCTtccttgtgtgttttgttaacgTCACGCTGGATTTATTCCGCGCTGTGTGAAGCAAAACCCAAGCGTGATTATTTTAGACACAATTCTGTACAAACTTTCTAATAATCAGAAATTTTTTTGCTCTCAGAAACGAC

Function

symbol description
fbl Predicted to enable RNA binding activity; histone-glutamine methyltransferase activity; and rRNA methyltransferase activity. Acts upstream of or within neurogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to several human genes including FBL (fibrillarin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384064 False 829 TUCP 0.53 5 607612 610009
TU384065 True 892 lncRNA 0.45 2 607612 608702

Neighbor

gene id symbol gene type direction distance location
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 83455 505314 ~ 524157 (+)
ppox ppox coding upstream 124314 469956 ~ 483298 (+)
LOC113524801 NA coding upstream 140989 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 150633 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 257063 333684 ~ 350549 (+)
etsrp LOC108256243 coding downstream 40909 650918 ~ 657392 (+)
pycard NA coding downstream 48472 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 64859 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 109380 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 196632 806641 ~ 816145 (+)
G324160 NA non-coding upstream 69 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 8442 598410 ~ 599170 (+)
G324125 NA non-coding upstream 18703 585179 ~ 588909 (+)
G324151 NA non-coding upstream 32474 573006 ~ 575138 (+)
G324140 LOC106578455,LOC103388722 non-coding upstream 50494 552723 ~ 557118 (+)
G324197 NA non-coding downstream 103386 713395 ~ 713801 (+)
G324216 NA non-coding downstream 139442 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 700902 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 719638 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 729519 1339528 ~ 1368639 (+)
G324143 NA other upstream 49473 557415 ~ 558139 (+)
G324120 NA other upstream 140987 454910 ~ 466625 (+)
G324085 NA other upstream 165325 438391 ~ 442287 (+)
G324067 NA other upstream 195503 354781 ~ 412109 (+)
G324068 NA other upstream 315024 241197 ~ 292588 (+)
G324206 NA other downstream 135664 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 164280 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 346575 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 508259 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1289617 1899626 ~ 1919710 (+)

Expression


Co-expression Network