G324197


Basic Information

Item Value
gene id G324197
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 713395 ~ 713801 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384105
gcacagaatgaaacgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattccataagagacacttttcagataaaaacataatgaaggctgctgggtttcgctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaaactgcacacactgcacctcagatactgctttatttatttaaagtgaaggatcgtcacattaaatactgactttatttcatttattactgtttactgctctttataggatttttttaatgtagaaacatttaatttcattatttttgaaggcgtctttactctacagcgtTTCTTTCCACgagcctaagacttttacac

Function

GO:

id name namespace
GO:0004935 adrenergic receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384105 True 407 lncRNA 0.36 1 713395 713801

Neighbor

gene id symbol gene type direction distance location
LOC113524791 LOC108256242 coding upstream 33025 674868 ~ 680370 (+)
pycard NA coding upstream 49419 658481 ~ 663976 (+)
etsrp LOC108256243 coding upstream 56003 650918 ~ 657392 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 189238 505314 ~ 524157 (+)
ppox ppox coding upstream 230097 469956 ~ 483298 (+)
gramd1a gramd1a,LOC108256231 coding downstream 5588 719389 ~ 745520 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 92840 806641 ~ 816145 (+)
cep85 cep85 coding downstream 118044 831845 ~ 843562 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding downstream 144309 858110 ~ 893602 (+)
rpp25l LOC108256289 coding downstream 190662 904463 ~ 906704 (+)
G324160 NA non-coding upstream 105852 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 114225 598410 ~ 599170 (+)
G324125 NA non-coding upstream 124486 585179 ~ 588909 (+)
G324151 NA non-coding upstream 138257 573006 ~ 575138 (+)
G324140 LOC106578455,LOC103388722 non-coding upstream 156277 552723 ~ 557118 (+)
G324216 NA non-coding downstream 35650 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 597110 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 615846 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 625727 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 627324 1341125 ~ 1342780 (+)
G324123 NA other upstream 78350 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 103386 607612 ~ 610009 (+)
G324143 NA other upstream 155256 557415 ~ 558139 (+)
G324120 NA other upstream 246770 454910 ~ 466625 (+)
G324085 NA other upstream 271108 438391 ~ 442287 (+)
G324206 NA other downstream 31872 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 60488 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 242783 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 404467 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1185825 1899626 ~ 1919710 (+)

Expression


Co-expression Network