G324284 (scap,LOC102785784,LOC107600505)


Basic Information

Item Value
gene id G324284
gene name scap,LOC102785784,LOC107600505
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1310911 ~ 1315115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384216
ACAAAAACCTTTGCCCTGTTAATAAAAATGGAACAGAGTATTTGCTGTACCCTCCTTCCTGAAGTATACAGTGCAACTTTCCAGCATTTGCATACCGACACTGGCCTAAAACATGtgtgactgattttttttaaatagtgggCATGGTAATCTGATTAAGGGTGTATGAAATTTCCAAGCATCTATTTTAGGAAACCCAGTCAGTACCAGGAATggcaaaaattattttcatgacACAGTGCGCAATTGGTTTTACACAAGTATACTACTGTTGTTTGCtcagaaatatgcaaatttagTTAGATGGTCTGACACCACTGGGTTTAATGGGATTTAATTTGTCTCTAGTGAAGTTCCTGaaatttcagtgaaaaacaTCCTGATCTTTTCCAATTCAGACTATTCACATTGAGGTTTCACATTCTTTAGAAGCTGAAAATAAGGGAATGTCTATGGACAAGTGATGTAGAACCTTACTGGTATCTTAGATCTAACTTGAAcaaacatctgttttttttccccaaaacattCGCTAACTTCCCAATTTTTCCAGATTTGGAAATCAAATTCTGAACTTCACCAGACTTTCAGGCCCTGCACATAACCATGTATGTGAAACGTGCAGTCGGTCGGAAGATTGTATCTTGCATATGGTCACATTGCCCATCCTTAATTAACAGCCTTATTTAATCCGCATGCGTTTATCCACTGCACAAAGTAGAGCCTTTAGCACCAGAAAAGTGGACCAGTGCtttttcaatcaaatttttCCTCCACTAGTCCGGTACCAAAGGAGCCAGTACAATGAGTATTTTTGGTACATCAAAAAAGCTCAGGCTTGGCATCAAGATGGCCTTCTGTTTACAGCTAATTGGTCTTGTATCACACAAAAAAGACCAGAACAGTCTGGTTTGTTGTTGGTGCTGCTGTTTCCGATGAAAGACAAGTCGTGGAAATTTAAAACTCCTTCATCTGTGAAACGATACATCAGATATTTAGCTACAGCTGATCTGAACTTCTGAACCAAAGAACCAACATTTAATCACCATGCTGAACTTAACAAGTGCGTTATCGTGGTTGTAATGATGATGCAGTCACTTTAACAGTCACTGTCATTCCTTAAGTTAATGGAGAATGAACCAGAACCACAAGTTTGGTTCCTGTTTTTGAACaggtagtaaaaaaaaaaaaaaaaaaatccatgataTTATAGCCCTAATTTTTGACTGAAAAACTCAAACTTGGAATGGAAGGTGCATTTCACAAATGAACTTTCTAAAGCTTAAATGCTAAACATACATGAAGGATGCTTTCACACTTGGAGTTTTTTCTCAACAACCAGCGCACATTTTACCAAAACAAAAAGGCATGCGGAATTCATGGATGCAGATAgaataatttgttaataatttaattatgattttagaattttttttttttttggccatagCAAAGCTTGTAAAATTGAAAAAGATTTAACATTTCAGAAAAGTTCATTGACatcaagtgtgaaagcagcctaacCCTACTTAATGGAACACACACTTCGAAACACACCGTCTCGCATTTCTTTAgagctcatcatcatcatcaccatcatcatcatcatcatcatctctaatAACCCCAGTATCTGTGCTACTGTCATTCTCAACTcatctaaaaacacacaaaagaaagaaatatggatAAAAACATCATTCACATTTCTACCAAACAAACTACACAGCTTTGGAAACTAactgcacccacacacacacacacacacacacacacacacacacacacacgcacaaactaAATCTCTCCACGCAGCAACACACcttaatatttacattcatattgCTAATAATTTAACATATCTGTGCTGTTTTGTGCGTTTCTACTCAGCTTTAAGGGTGTGAATGCAGTGCATGTTGCAGAGTCAGGTTTAAGTAAAATGACATCAAAATTACAATTTGGTCGAACGTCGAAATTTGAAAGGAggctttaaaaaattattcgttgagaaaaaaaaacacattgattACACGAAGCATTTCCTGGTGACGCTGACTTTCTTCTCTATGCGTAGTGTTTTTTAAAGGAACCGTCTGTGATTATCTGCTTTAACTCCAGGGTAGACATTCAGgtgtaaaaaagtaaataaataaaaggacaaAACTGTTaagaaaatacttaaaaaaaaaaataaaaaattccactCGTTCTATgatatgtacagaaaaaaaggaaaaatgtaggTCAAGCATGTCAAGCATATAAAATACTTCTCAGCATTATTACGAGTCTAAGCTGTTCTCATGGTTTATGACAGGACTACACTTCATCTTTAGCGTAATCAAACCTGGGCTGTGGCGAGAAGGTCGGGTTCGATCCTCCTGTAGAGCTCACATTGGTAATATCGTATCGTGATGTACGATgtaactgattatcagcacatcCCTAAGCTCTGACTGCGGTGCGAGCTGCTCGTGGAGTTGCATTtctacaacaaacaaataaaaacattttaaaaatgtttaaAATGAAGCTGATGCGCTAAGAACCGAAGGTGTGAACTGATAATGAGTTAAACGACGTACTGTTGACAGGAGACTACTCTTTCTCTACTGAGTTAAAGTCAATTcttttttagaaaacaaaacGTGGGGCGGATAAATCGGGTTACGAATCCGGGCTTTCAGGTCATAGTAGGTGCGTAACGATCGGACGATTTTAAAGACAACGACCGAAATGAATCAATGCAACaattttaatctgattattatcAGAAAAGGGACAAACAACTggtgtgtataaaataataaaatagtccttctctttGTCATCATTTGCCAATTAGCTGTAAATTTCATCACACGTCGACCGGAGGCTACTAAATCGAATCgtattgtatcatatcgtagcagattcagtggaaTCGTCAAAAATATCGGATCATTGTATTAAGAATCGGAATAATATCATATCTCGTGttgaagcctgaggtttacacccctAATGTATGATCATCAGTTCAGTAGTAGTGCTGTCATTTCTCTCCCGTCCAACCAActggagaaagaaaaactcaTTTCACAATTAAAGAAAGCAGACCCTCACTGTCCAAATGAatactattatataattaaagtttaaattagTCAGCGCCTTTTATACATTAAAGATCTGACAATAATAAATGAGAGTTTAGCATTTTCGTACAAACGGTTAGAATTTATCACTAAtaaataatggatttttttaaatattaaaaagtgacACGTCTCCCTCAACACTCGCTCAACACACCTCCTTTACAGGTTCATCTAATTACAGTAAGCCTTAGGAACaattctttctctcactcacacacacacacacacacacacacacacacacacacactcatcagcaGTTATTCTCCATGTAAACGTCTACATCTcgctcttaaacacacacacacacagctctctttCTTCAGGCAGCGATGCTCAGCGTCCCGTTCACCCCGCGTGTAAAAAATACATTgcgatttgatttttttttttgagtctttttctagcaaaaaatataaaaaaagctcTTAAGGTCCAGTCttcctttagaaaaaaaaagcaagaactcacacatacacacacaaatgtcatGCCCTATTTCTGTCCCactactggcatgttattaaaaaaaaaatccccaggGCTTTAaaactctctcactctctctctctctctctctctctcattctctcatctTTCAAatcattgtgtatttttatttgtacacaATTTCTGTCCAAACCTGCACTTCCTGCTTTTCCtgaaagaaacaggaagtaaaagcCCAAGCAGAGACGACAgtccatcacatcacacacacacacttctaaacttctgtgtgtgtgtgtgtgtttagtccaGCTTCTCCAGTACAGAGGGCACATAGACGAGGCTGAGCTCGCTGCCAAAGTCACACACGATGGCGGCGTTTTCCAGCACGAGGAGCTGCCGCACGTGCTGCCCCTCGCTGTTCTGACCCAGATACACCGTCTGCAGCAGGTCCCCGTAGTTCAGGTCCCAGAACGACACGCAGCCGTTACCTCCGGTCACTAATAAACTCTCGGAAATCACTGCCAGACTGGC

Function

symbol description
scap Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384216 True 4124 lncRNA 0.38 2 1310911 1315115

Neighbor

gene id symbol gene type direction distance location
ptpn23a ptpn23,ptpn23a coding upstream 197 1296876 ~ 1310714 (+)
LOC113541446 LOC108256266 coding upstream 123550 1185520 ~ 1187361 (+)
LOC117595784 LOC108256266,LOC108256164 coding upstream 143953 1138279 ~ 1166958 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding upstream 186730 1103739 ~ 1124181 (+)
cmtm6 NA coding upstream 355518 934154 ~ 955393 (+)
si:ch211-269k10.4 NA coding downstream 166784 1481899 ~ 1484529 (+)
LOC113532957 LOC108256297 coding downstream 393317 1708432 ~ 1713392 (+)
dnase2 LOC108256294 coding downstream 409016 1724131 ~ 1734131 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding downstream 455713 1770828 ~ 1788284 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding downstream 481240 1796355 ~ 1898390 (+)
G324216 NA non-coding upstream 557468 749451 ~ 753443 (+)
G324197 NA non-coding upstream 597110 713395 ~ 713801 (+)
G324160 NA non-coding upstream 703368 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 711741 598410 ~ 599170 (+)
G324125 NA non-coding upstream 722002 585179 ~ 588909 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 14532 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 24413 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 26010 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 63431 1378546 ~ 1378940 (+)
G324360 NA non-coding downstream 113681 1428796 ~ 1429158 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 147297 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 300688 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 504383 774289 ~ 806528 (+)
G324206 NA other upstream 562436 745673 ~ 748475 (+)
G324123 NA other upstream 675866 567202 ~ 635045 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 584511 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 827077 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 889731 2204846 ~ 2215410 (+)
G325435 NA other downstream 1250585 2565700 ~ 2569739 (+)
hamp NA other downstream 2696265 4011380 ~ 4013538 (+)

Expression


Co-expression Network