G324294 (scap,LOC107666822,LOC107600505,LOC107713836)


Basic Information

Item Value
gene id G324294
gene name scap,LOC107666822,LOC107600505,LOC107713836
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1329647 ~ 1330871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384226
gtgtgtgtgtgtgtgataaagccgagaaggaggaggagaaagaggagaaagaggagaaggaggagaaggaggagcaggagaaggAGCTCACGGGTGGAGAAGTAGATGTAGGCGAAGAGGATGATGTAGGTGGTGACGAGGGGGATCAGTTCAGCGATGCCGATCTCCTCTTTAAAGTGGATGTGCACCATGTGATCCTCACGCAGGCTGCAGTTCACCGACGGGTGGAGCTGCTTCAGACGGGCACGCAGGCTGCCTacaaacctgcacacacacacacacacacacgtaaattATACACAAGGCAGGTGCAGTTAGCATTCCACAGCACTGCACACCTGGCTCAGGTGCACTGGAGGCTGAAAGTTTACAGATAATACGTAAAAAGCAACCTGGAGTCATAACTGCTGAAGGCGATGGTGATGGTGTAGGTGACGACTCGCTTTTTACTGTACAGACTGACGCCTGTGCTTTTCCCTGGAACCCCGAACAGCAgCGTGGCGGACGTGTGCAGGCCTTTGGGTTCGTGCTGCTGGACGGTCTTCAGGATGTCTGGATCCGAGTCGAACACGTCTCGTCGGTTCTGCCAGTAGTTGCCGGGGGAAACCAGCAGGCAGCCGTGTTCAGGAAGCACAGACTGCATGCGCCGTAACCCCGGCAACAGATCCGTCACCTGGAGACACAAACTCTCCAATCCTCTGTAGAGCGGACAAGAAACACAAAGAGTTCAGATTAAAGGCGGAAAGACGAGACACAGTATAAGGAGGAAGAAGAATAGGGGAATGTTCTGGACCTGTCAGCATAAACATGGTCACGAATCTCCTCCAGGAGGCTGAAGACTCGTCCGAGCGGCGAGCGGAAAACGTCCACGGGCACCAAGCTGCTGTCCCACGGAGACACGGCCGCCTTCACTAACACCTGCTGGATGTACGCGACTGGAGCGCCGTGATACTGCAGAGACACACGATGATACAGGCGCAGAGTTTACACCCTGCTCACTCAAGCATCAACCAAACACATCCAACAAGTTACAACAtacaattctg

Function

symbol description
scap Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384226 True 1046 lncRNA 0.54 2 1329647 1330871

Neighbor

gene id symbol gene type direction distance location
ptpn23a ptpn23,ptpn23a coding upstream 18933 1296876 ~ 1310714 (+)
LOC113541446 LOC108256266 coding upstream 142286 1185520 ~ 1187361 (+)
LOC117595784 LOC108256266,LOC108256164 coding upstream 162689 1138279 ~ 1166958 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding upstream 205466 1103739 ~ 1124181 (+)
cmtm6 NA coding upstream 374254 934154 ~ 955393 (+)
si:ch211-269k10.4 NA coding downstream 151028 1481899 ~ 1484529 (+)
LOC113532957 LOC108256297 coding downstream 377561 1708432 ~ 1713392 (+)
dnase2 LOC108256294 coding downstream 393260 1724131 ~ 1734131 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding downstream 439957 1770828 ~ 1788284 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding downstream 465484 1796355 ~ 1898390 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding upstream 14532 1310911 ~ 1315115 (+)
G324216 NA non-coding upstream 576204 749451 ~ 753443 (+)
G324197 NA non-coding upstream 615846 713395 ~ 713801 (+)
G324160 NA non-coding upstream 722104 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 730477 598410 ~ 599170 (+)
G324303 NA non-coding downstream 8657 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 10254 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 47675 1378546 ~ 1378940 (+)
G324360 NA non-coding downstream 97925 1428796 ~ 1429158 (+)
G324326 NA non-coding downstream 125606 1456477 ~ 1459325 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 166033 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 319424 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 523119 774289 ~ 806528 (+)
G324206 NA other upstream 581172 745673 ~ 748475 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 719638 607612 ~ 610009 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 568755 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 811321 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 873975 2204846 ~ 2215410 (+)
G325435 NA other downstream 1234829 2565700 ~ 2569739 (+)
hamp NA other downstream 2680509 4011380 ~ 4013538 (+)

Expression


Co-expression Network