G324305


Basic Information

Item Value
gene id G324305
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1341125 ~ 1342780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384241
acacacacaaaactaaatATAATGTTCAAACTCTGTTAGCGTTAATAAAATTATAGCTGAATTTTATCAAAAAATCAAAttcaatattcattcatttgtaatCCGTTCCCATGGTATTAGCtactaagctagctagcatagaAACACTAGCCTGCTAATAAGCTAAGCAACAAACCGCTCTGTTTAAAGGCGTATTCTGTTGTTTAAACATctcattttgtgatttttgaacCCAGAACACACTTTAAACACCAATTTATCTGTTAATTAAGATGTATTTTTTTGAGAAACTGGACTTAAACCGCTTCCTCGCGGCTAAGATGGTTAGCATTAGCCAGTGTTAGCTACAGTAGCACTCATGCTTTCTTAAAGTGCACGAGCGATTAGGCAACAAAAATGTCACCAAATTCTGATCTTTTAAACTGCAGGAAAGTCAAACTCACCTGAAAAGCTTCTCTTCTTCCTATAGAAGCGATTTATTTCACAATCTGGACGATCTGTGCTgcagctttgtgttttttttgttttttaataaaacaggaTATTAAAGCACACAGTCGAATATATACACTATTTTGACAGATTCAagttagctgtgtgtgtgtgtgtgtgtgtgtgtaacatgaaCCCACAACTTCAACCTGCtttctataaaacacacacaaactccgcCATCTTGTGGTCACTAAAGAAACAGATCGCTTTTTGTCAGTGAATCAGATCATTCGACtcagagtcgactctttttttttgatgagCTGAGCCAAGTGATCTGAGTCATTTGCCTCTTTTCAGTGACTCAAATCATTTGACTCAGAGTCGACTCGGATTCATGTGCTGAGCCAAGAGATCTGATTCACTGAAAAGAATCAAATTTTTCTTTAGCGACGATTTGCTCTTTTCAGTGAATCTTGTCATTTAACtcagagtcgactctttttaaTGAGCTGTTACTTTAGCGAGTTTGTTCTTTCTGTAAACGATATAAGTTGACTCAGAGGCGATTCTGTTTGATAACCTGAGTCAATTGATCTGAGTCATTTGCCTCTTTTCAGTGAATCAAATCATTTGACTTAGAATCGACTCGGATTCATGTGCTGAGCCAAGAGATCTGATTCACTGAAGAGAATCAAATTTTTCTTTAGCGACGATTTGCTATTTTCAGTGAATCATGTCATTTAACTCAGAGTTGACTCTGTTTAATTAGCTGAGCCAAGTGATCTGATTCAGTTCTTTCAATTCAGTATAGATTAACTGATTCAAAAGGGATTCAACAGATTCACTTTCTATTGTACTATAAAATTTCCTTAGTCCTTTTCTGCATCTCTGtctaaactaaattaaaattaattttattgataaaacatttacttcTGCAGAGCTTtgctaaattattaatttttaaatttgtttaaatttttaaattggaaatgttattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384241 True 1441 lncRNA 0.34 2 1341125 1342780

Neighbor

gene id symbol gene type direction distance location
ptpn23a ptpn23,ptpn23a coding upstream 30411 1296876 ~ 1310714 (+)
LOC113541446 LOC108256266 coding upstream 153764 1185520 ~ 1187361 (+)
LOC117595784 LOC108256266,LOC108256164 coding upstream 174167 1138279 ~ 1166958 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding upstream 216944 1103739 ~ 1124181 (+)
cmtm6 NA coding upstream 385732 934154 ~ 955393 (+)
si:ch211-269k10.4 NA coding downstream 139119 1481899 ~ 1484529 (+)
LOC113532957 LOC108256297 coding downstream 365652 1708432 ~ 1713392 (+)
dnase2 LOC108256294 coding downstream 381351 1724131 ~ 1734131 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding downstream 428048 1770828 ~ 1788284 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding downstream 453575 1796355 ~ 1898390 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding upstream 10254 1329647 ~ 1330871 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding upstream 26010 1310911 ~ 1315115 (+)
G324216 NA non-coding upstream 587682 749451 ~ 753443 (+)
G324197 NA non-coding upstream 627324 713395 ~ 713801 (+)
G324160 NA non-coding upstream 733582 607045 ~ 607543 (+)
G324328 NA non-coding downstream 35766 1378546 ~ 1378940 (+)
G324360 NA non-coding downstream 86016 1428796 ~ 1429158 (+)
G324326 NA non-coding downstream 113697 1456477 ~ 1459325 (+)
G324382 NA non-coding downstream 118759 1461539 ~ 1463187 (+)
G324799 NA non-coding downstream 249703 1592483 ~ 1619873 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 177511 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 330902 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 534597 774289 ~ 806528 (+)
G324206 NA other upstream 592650 745673 ~ 748475 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 731116 607612 ~ 610009 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 556846 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 799412 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 862066 2204846 ~ 2215410 (+)
G325435 NA other downstream 1222920 2565700 ~ 2569739 (+)
hamp NA other downstream 2668600 4011380 ~ 4013538 (+)

Expression


Co-expression Network