Fish Transcriptome and Expression Database

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economic fish

G324449

Basic Information

Item	Value
gene id	G324449
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047616.1
NCBI id	CM018562.1
chromosome length	21037487
location	55495 ~ 55786 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384408
cttcattcttttcctcttcctcatcctcaacttcttcttcagtttcttcCTCTGAAGCCACATTAATTTGCAGATCATCACAACTATCAGTCAAGTTCCTGTAGAACACCCCCTCCTCAGGCTCCACCAtgccctccctttctctctctctctctgtctctctctctctctctctctctctctctctctctctccctttctctctgtctctgtctctctctctctctcccttt

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU384408	True	233	lncRNA	0.47	2	55495	55786

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC113525569	pttg	coding	upstream	2636	58422 ~ 61552 (-)
kdf1a	LOC108256236	coding	upstream	81903	137689 ~ 147138 (-)
eomesb	LOC108256235	coding	upstream	92819	148605 ~ 158579 (-)
azi2	azi2,LOC107570847,LOC108261202	coding	upstream	138862	194648 ~ 203737 (-)
pkdc	LOC108256330	coding	upstream	341246	397032 ~ 400945 (-)
G324019	NA	non-coding	downstream	36747	18544 ~ 18748 (-)
G324017	NA	non-coding	downstream	39715	15478 ~ 15780 (-)
G324450	NA	non-coding	upstream	587	56373 ~ 56830 (-)
G324465	NA	non-coding	upstream	35116	90902 ~ 91291 (-)
G324481	NA	non-coding	upstream	162992	218778 ~ 219050 (-)
G324482	NA	non-coding	upstream	168332	224118 ~ 224913 (-)
G324488	NA	non-coding	upstream	192174	247960 ~ 249715 (-)
LOC113523705	LOC108261200	other	upstream	143673	199459 ~ 211469 (-)
herpud2	LOC108256328,LOC108431059,LOC107666842	other	upstream	178720	234506 ~ 331761 (-)
slc4a7	slc4a7,LOC108256322,LOC107686077,LOC107666816	other	upstream	294952	350738 ~ 396573 (-)
smarcc1a	smarcc1,LOC107600486,LOC107666814,LOC107686050	other	upstream	318413	374199 ~ 454823 (-)
dyrk1b	dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201	other	upstream	493274	549060 ~ 575271 (-)

Expression

Co-expression Network