G324450


Basic Information

Item Value
gene id G324450
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 56373 ~ 56830 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384409
CTGTCTCTAAAGGCCCTTTGACAGGTtgatgcctccttcactgagactgacaggtacagaggccacgcctccttcactgagactgacaggtacagaggccacgcctccttcactgagactgacaggtacagaggccacgcctccttcactgagactgacaggtacagaggccacgcctccttcactgagactgacaggtacagaggccacgcctccttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384409 True 220 lncRNA 0.57 2 56373 56830

Neighbor

gene id symbol gene type direction distance location
LOC113525569 pttg coding upstream 1592 58422 ~ 61552 (-)
kdf1a LOC108256236 coding upstream 80859 137689 ~ 147138 (-)
eomesb LOC108256235 coding upstream 91775 148605 ~ 158579 (-)
azi2 azi2,LOC107570847,LOC108261202 coding upstream 137818 194648 ~ 203737 (-)
pkdc LOC108256330 coding upstream 340202 397032 ~ 400945 (-)
G324449 NA non-coding downstream 587 55495 ~ 55786 (-)
G324019 NA non-coding downstream 37625 18544 ~ 18748 (-)
G324017 NA non-coding downstream 40593 15478 ~ 15780 (-)
G324465 NA non-coding upstream 34072 90902 ~ 91291 (-)
G324481 NA non-coding upstream 161948 218778 ~ 219050 (-)
G324482 NA non-coding upstream 167288 224118 ~ 224913 (-)
G324488 NA non-coding upstream 191130 247960 ~ 249715 (-)
G324498 NA non-coding upstream 240405 297235 ~ 321868 (-)
LOC113523705 LOC108261200 other upstream 142629 199459 ~ 211469 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other upstream 177676 234506 ~ 331761 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other upstream 293908 350738 ~ 396573 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other upstream 317369 374199 ~ 454823 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other upstream 492230 549060 ~ 575271 (-)

Expression


Co-expression Network