LOC113523705 (LOC108261200)


Basic Information

Item Value
gene id LOC113523705
gene name LOC108261200
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 199459 ~ 211469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384445
gatgttccGATGGAGTGGAGAGAACTCGTACTTTGTGAGAGGATTCCTCGACTGTCTGCAGCTCGGAGCAGGAGGAGGGCCGTTCGGGTTGTGGTTAGACTCAGATCTTCTCCGAGGCTCGACGTTTTCCTGTAACACGTTCCGTAACGCTCCTCTGTCTCCACATCACGACTTCAGCGTGCGAGCGCTCGAGGTTTGGAGCTTCCAGTGAACACGAGAACCCACGAGAGAACCCCATCCTGAGAGTGTCCAtatcactcttacacacacacacacacacacacacaNNNNNNacacacacacacacacacaat
>XM_034297977.1
GGTGAGCTGAACAGAAAACTCCTGAACCTCGTCTTCTCTGATCTGTCCATCATGGGCGTGGCCTACAGCGTAGGAGAagtgGATCATCTGTACACTTTCTTCGTTCAGTGGTCTCCAAACATGTACAGCAACCGCCGCAGGAAACGCAGCATCTTATTGGTCGATGAGGAAAAactcgctgtgattgacagcttgCTGAGAGATCCGGATCCTGAACACTGGAATATCATCACGGTGAGGAAGGGGAAGCGTTCTCAGAGTGTGTGCAGCTCTCCGAGTGGGTCAACCTCCGAGGACGAGGACGCTGAGGACACACTTCCTGTGCTGCAGCAGGACAGTCACATCCTCAGGGAGCATCACATAGAGAAGttaGCTCCACATCTCCCAGCTCGTGTTCAGTGCTCTACCTGGCAGCTGGTTTACAGCACCGAGATTCACGGCACCAGTCTGAAAACTCTGTacagaaaaacagcagaaatCCAACAACCGGTACTGCTGCTGATACAGGACACAcacaaccaggtattCGGGGCGTTTTCCTCCGACTCGTTCAGAGTGAGTGATTGCTGCTACGGAACTGGAGAGACGTTCCTCTACACATTCAGCCCTGAGTTTAAGatgttccGATGGAGTGGAGAGAACTCGTACTTTGTGAGAGGATTCCTCGACTGTCTGCAGCTCGGAGCAGGAGGAGGGCCGTTCGGGTTGTGGTTAGACTCAGATCTTCTCCGAGGCTCGACGTTTTCCTGTAACACGTTCCGTAACGCTCCTCTGTCTCCACATCACGACTTCAGCGTGCGAGCGCTCGAGGTTTGGAGCTTCCAGTGAACACGAGAACCCACGAGAGAACCCCATCCTGAGAGTGTCCAtatcactcttacacacacacacacacaca
>XM_034297978.1
AAATCACACAAACCCATCAgacagctaacacacacacagaggaggggaaaaaacacacagggaAAAAATCCAGCCAATGAAAGTGAATGTGGGCGGAAGGGTATAAAGAGCAGAGACGTTGACATTTCATTCACACAACCAAAACCCTGCggcactaaacacacactcacacactcacatatacccACACTGTAGTGTATTATACTaatatgttactgaaaaacagagtcagtatgagagagagaacagaggagaACGTAAAGATCCTGTTCTTCTGCAGAGGCTGTGAGGAACCTTACGTACAGATCATCACGGTGAGGAAGGGGAAGCGTTCTCAGAGTGTGTGCAGCTCTCCGAGTGGGTCAACCTCCGAGGACGAGGACGCTGAGGACACACTTCCTGTGCTGCAGCAGGACAGTCACATCCTCAGGGAGCATCACATAGAGAAGttaGCTCCACATCTCCCAGCTCGTGTTCAGTGCTCTACCTGGCAGCTGGTTTACAGCACCGAGATTCACGGCACCAGTCTGAAAACTCTGTacagaaaaacagcagaaatCCAACAACCGGTACTGCTGCTGATACAGGACACAcacaaccaggtattCGGGGCGTTTTCCTCCGACTCGTTCAGAGTGAGTGATTGCTGCTACGGAACTGGAGAGACGTTCCTCTACACATTCAGCCCTGAGTTTAAGatgttccGATGGAGTGGAGAGAACTCGTACTTTGTGAGAGGATTCCTCGACTGTCTGCAGCTCGGAGCAGGAGGAGGGCCGTTCGGGTTGTGGTTAGACTCAGATCTTCTCCGAGGCTCGACGTTTTCCTGTAACACGTTCCGTAACGCTCCTCTGTCTCCACATCACGACTTCAGCGTGCGAGCGCTCGAGGTTTGGAGCTTCCAGTGAACACGAGAACCCACGAGAGAACCCCATCCTGAGAGTGTCCAtatcactcttacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384445 False 314 lncRNA 0.52 3 199459 206137
XM_034297977.1 False 898 mRNA 0.52 7 205263 211469
XM_034297978.1 True 978 mRNA 0.50 6 205263 209001

Neighbor

gene id symbol gene type direction distance location
eomesb LOC108256235 coding downstream 40880 148605 ~ 158579 (-)
kdf1a LOC108256236 coding downstream 52321 137689 ~ 147138 (-)
LOC113525569 pttg coding downstream 137907 58422 ~ 61552 (-)
cdk14 cdk14 coding downstream 141697 37985 ~ 57762 (-)
pkdc LOC108256330 coding upstream 185563 397032 ~ 400945 (-)
cspg5a LOC108256325 coding upstream 192635 404104 ~ 428410 (-)
zp3d.2 NA coding upstream 318846 530315 ~ 535250 (-)
LOC113524795 NA coding upstream 326726 538195 ~ 544033 (-)
alkbh8 alkbh8 coding upstream 386927 598396 ~ 605015 (-)
G324465 NA non-coding downstream 108168 90902 ~ 91291 (-)
G324450 NA non-coding downstream 142629 56373 ~ 56830 (-)
G324449 NA non-coding downstream 143673 55495 ~ 55786 (-)
G324019 NA non-coding downstream 180711 18544 ~ 18748 (-)
G324017 NA non-coding downstream 183679 15478 ~ 15780 (-)
G324481 NA non-coding upstream 7309 218778 ~ 219050 (-)
G324482 NA non-coding upstream 12649 224118 ~ 224913 (-)
G324488 NA non-coding upstream 36491 247960 ~ 249715 (-)
G324498 NA non-coding upstream 85766 297235 ~ 321868 (-)
G324504 NA non-coding upstream 103930 315399 ~ 319003 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other upstream 23037 234506 ~ 331761 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other upstream 139269 350738 ~ 396573 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other upstream 162730 374199 ~ 454823 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other upstream 337591 549060 ~ 575271 (-)
G324579 NA other upstream 515158 726627 ~ 727634 (-)

Expression


Co-expression Network