herpud2 (LOC108256328,LOC108431059,LOC107666842)


Basic Information

Item Value
gene id herpud2
gene name LOC108256328,LOC108431059,LOC107666842
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 234506 ~ 331761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384468
cacacacacacacacacacacacacacacacactctctctctcctctctctctctctctcgcagtctctctctgtctctctctctctctctctctctctctctctctctctagtaaAATGCTGTGATGTTGGACAGTGAGACTGGAAGCTGCTGTTGGGACGCGACCCGGAGAGATGTTTTCCTCCCCACAGCACTCGTCCTGTCAGTGTGATGACTGAGACTCGTGGACGCTGAGCGAGCAGaaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtgtgtgtgtgttctgacccgGATTTGTCTGTTCAGTAAGTCGGCAGCGATGTTCCTCTGACTCATGGCTTCACAGCGTAACACTGATCATGGCCTCACACCGGAGAACgcaggggtcagaggtcatcaGGAGCCTGAGCG
>XM_034298130.1
tctctctctctctctctgtctctctctctctctctcgcagtctctctctgtctctctctctctctctctctctctctctctctctctagtaaAATGCTGTGATGTTGGACAGTGAGACTGGAAGCTGCTGTTGGGACGCGACCCGGAGAGATGTTTTCCTCCCCACAGCACTCGTCCTGTCAGTGTGATGACTGAGACTCGTGGACGCTGAGCGAGCAGaaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtatgtgtgtgttctgagctTCGATTAGTATGAAACATGGAGGAACACGGAGCTGACAGTCCCATCACCCTGATCATCCGCGCGCCAAACCAGAAATATGACGACCAGCCAATCAGCTGCTTCCTCGACTGGACtgtggagaaactgaagaaacaCATCTCTAAAGTTTATCCCAGCAAaccaTTGTCCCGAGAGCAGCGGCTGGTTTACTCCGGACGTCTTCTACAGGATCACCAGCAGCTCCGGGACGTGCTCCGAAAGCAGGACGAGTATCACATGGTCCACCTGGTGTGCGCACCCCGGAGTCCCCCAGCTGACCCCTGTGACCCCTccgtgacctctgaccctgaCTCTGCAAATGCAGCCTCTGCTGACCCCGCCCCCTCCGCCTCTCCATCCAATCAGAACGTCCCAGACCCCTCTCTCACAGGAAGTACAGACGGCGTTCGACACCGAGGAGGATCTGCTCACGCTCACCAGCGacctGAGGGAGCCGTGTTTCCTGcagcgccccctgctgcacTTCCTCCTCACAGCGTGtacacacctgtacaggtgATGTGGTGGCAGCGTGTGTATGCGCAGCATTACTACATGCACTATCAGGCTGCGATGGCCGCCGCTCAGGCCCCGCCCCCTCCGGTTAATCCTGGCCCTTCGGTCACTCCGGCTCCGGCCCCGGTTCCAGTTAACCCCGCCCCACTGGAGCAACCGGCGAATCAGAACCCTCAGATGAACGCGCAGGGCGGGGCCGTGCAGAACGAGGACGAGCTGAACCGTGATTGGCTGGACTGGCTGTACACGGTGTCGCGCGCCGCCGTCCTCCTCAGCATCGTCTATTTCTATTCGTCCTTCAGTCGCTTCGTCATGGTGATCGGCGCCATGCTGCTCGTCTACCTgcaccaGGCGGGATGGTTCCCCTTCAGGGTGGAGCTGCAGAACCCTGGAGCAGCAGAGCGACCCCCAGCGGAGAACGACAGAAACCACAACATGCAGGAAATGgagCGCATTATGGATGATGGTCttgaggatgatgatggtgacaGTGGTGATGAAGGCTCTGATGAAGCCGCTCCTCCTCAGCCGAGCTTCCTCACGTCCACGTGGTCCTTCATCAGCACCTTCTTCACCTCGCTGGTTCCTGAGGGTCCTCCTCGCGGCGCTagataaacaccacacacacacacacacacatgcacacagtgaaCTTTGACCCCTTACAGAAGAAATAAACCCACAAACAGCAGCGTGGTGGTCGACGTCTGGCCTGATTCTGCTGAACGAGTGCTGCTCAAGTTTCTCATCTCCGCCGCTGTTGGGTTCTTCATCAGGCGAGAGGAACGAGTGGAAGGTTCCTGTGTTCTTCTTTCCCATCTCATcataagaactttttttttaacaaaacagaaGACTTGTGTAACTGCTTCAGTTCTCCACTTTCTTTCATTGTATGTAAATAAGTATGGCgtatttacagatttaaataTTTGCATCTCATTGATCTGAAGTGTGTTTTTGATTAAACTGATGAAACAGCTGA
>XM_034298131.1
tctctctctctctctctgtctctctctctctctctcgcagtctctctctgtctctctctctctctctctctctctctctctctctctagtaaAATGCTGTGATGTTGGACAGTGAGACTGGAAGCTGCTGTTGGGACGCGACCCGGAGAGATGTTTTCCTCCCCACAGCACTCGTCCTGTCAGTGTGATGACTGAGACTCGTGGACGCTGAGCGAGCAGaaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtatgtgtgtgttctgagctTCGATTAGTATGAAACATGGAGGAACACGGAGCTGACAGTCCCATCACCCTGATCATCCGCGCGCCAAACCAGAAATATGACGACCAGCCAATCAGCTGCTTCCTCGACTGGACtgtggagaaactgaagaaacaCATCTCTAAAGTTTATCCCAGCAAaccaTTGTCCCGAGAGCAGCGGCTGGTTTACTCCGGACGTCTTCTACAGGATCACCAGCAGCTCCGGGACGTGCTCCGAAAGCAGGACGAGTATCACATGGTCCACCTGGTGTGCGCACCCCGGAGTCCCCCAGCTGACCCCTGTGACCCCTccgtgacctctgaccctgaCTCTGCAAATGCAGCCTCTGCTGACCCCGCCCCCTCCGCCTCTCCATCCAATCAGAACGTCCCAGACCCCTCTCTCACAGGAAGTACAGACGGCGTTCGACACCGAGGAGGATCTGCTCACGCTCACCAGCGacctGAGGGAGCCGTGTTTCCTGcagcgccccctgctgcacTTCCTCCTCACAGCGTGtacacacctgtacaggtgATGTGGTGGCAGCGTGTGTATGCGCAGCATTACTACATGCACTATCAGGCTGCGATGGCCGCCGCTCAGGCCCCGCCCCCTCCGGTTAATCCTGGCCCTTCGGTCACTCCGGCTCCGGCCCCGGTTCCAGTTAACCCCGCCCCACTGGAGCAACCGGCGAATCAGAACCCTCAGATGAACGCGCAGGGCGGGGCCGTGCAGAACGAGGACGAGCTGAACCGTGATTGGCTGGACTGGCTGTACACGGTGTCGCGCGCCGCCGTCCTCCTCAGCATCGTCTATTTCTATTCGTCCTTCAGTCGCTTCGTCATGGTGATCGGCGCCATGCTGCTCGTCTACCTgcaccaGGCGGGATGGTTCCCCTTCAGGGTGGAGCTGCAGAACCCTGGAGCAGCAGAGCGACCCCCAGCGGAGAACGACAGAAACCACAACATGCAGGAAATGgagCGCATTATGGATGATGGTCttgaggatgatgatggtgacaGTGGTGATGAAGGCTCTGATGAAGCCGCTCCTCCTCAGCCGAGCTTCCTCACGTCCACGTGGTCCTTCATCAGCACCTTCTTCACCTCGCTGGTTCCTGAGGGTCCTCCTCGCGGCGCTagataaacaccacacacacacacacacacacacacacacacacacatacacac
>XM_034298132.1
tctctctctctctctctgtctctctctctctctctcgcagtctctctctgtctctctctctctctctctctctctctctctctctctagtaaAATGCTGTGATGTTGGACAGTGAGACTGGAAGCTGCTGTTGGGACGCGACCCGGAGAGATGTTTTCCTCCCCACAGCACTCGTCCTGTCAGTGTGATGACTGAGACTCGTGGACGCTGAGCGAGCAGaaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtatgtgtgtgttctgagctTCGATTAGTATGAAACATGGAGGAACACGGAGCTGACAGTCCCATCACCCTGATCATCCGCGCGCCAAACCAGAAATATGACGACCAGCCAATCAGCTGCTTCCTCGACTGGACtgtggagaaactgaagaaacaCATCTCTAAAGTTTATCCCAGCAAaccaTTGTCCCGAGAGCAGCGGCTGGTTTACTCCGGACGTCTTCTACAGGATCACCAGCAGCTCCGGGACGTGCTCCGAAAGCAGGACGAGTATCACATGGTCCACCTGGTGTGCGCACCCCGGAGTCCCCCAGCTGACCCCTGTGACCCCTccgtgacctctgaccctgaCTCTGCAAATGCAGCCTCTGCTGACCCCGCCCCCTCCGCCTCTCCATCCAATCAGAACGTCCCAGACCCCTCTCTCACAGGAAGTACAGACGGCGTTCGACACCGAGGAGGATCTGCTCACGCTCACCAGCGacctGAGGGAGCCGTGTTTCCTGcagcgccccctgctgcacTTCCTCCTCACAGCGTGtacacacctgtacaggtgATGTGGTGGCAGCGTGTGTATGCGCAGCATTACTACATGCACTATCAGGCTGCGATGGCCGCCGCTCAGGCCCCGCCCCCTCCGGTTAATCCTGGCCCTTCGGTCACTCCGGCTCCGGCCCCGGTTCCAGTTAACCCCGCCCCACTGGAGCAACCGGCGAATCAGAACCCTCAGATGAACGCGCAGGGCGGGGCCGTGCAGAACGAGGACGAGCTGAACCGTGATTGGCTGGACTGGCTGTACACGGTGTCGCGCGCCGCCGTCCTCCTCAGCATCGTCTATTTCTATTCGTCCTTCAGTCGCTTCGTCATGGTGATCGGCGCCATGCTGCTCGTCTACCTgcaccaGGCGGGATGGTTCCCCTTCAGGGTGGAGCTGCAGAACCCTGGAGCAGCAGAGCGACCCCCAGCGGAGAACGACAGAAACCACAACATGCAGGAAATGgagCGCATTATGGATGATGGTCttgaggatgatgatggtgacaGTGGTGATGAAGGCTCTGATGAAGCCGCTCCTCCTCAGCCGAGCTTCCTCACGTCCACGTGGTCCTTCATCAGCACCTTCTTCACCTCGCTGGTTCCTGAGGGTCCTCCTCGCGGCGCTagataaacaccacacacacacacacacacacacacacacacacaca

Function

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384468 False 432 lncRNA 0.53 4 234506 331761
XM_034298130.1 True 1809 mRNA 0.55 8 326945 331083
XM_034298131.1 False 1486 mRNA 0.58 9 318404 331083
XM_034298132.1 False 1479 mRNA 0.58 9 302661 331083

Neighbor

gene id symbol gene type direction distance location
azi2 azi2,LOC107570847,LOC108261202 coding downstream 30769 194648 ~ 203737 (-)
eomesb LOC108256235 coding downstream 75927 148605 ~ 158579 (-)
kdf1a LOC108256236 coding downstream 87368 137689 ~ 147138 (-)
LOC113525569 pttg coding downstream 172954 58422 ~ 61552 (-)
cdk14 cdk14 coding downstream 176744 37985 ~ 57762 (-)
pkdc LOC108256330 coding upstream 65271 397032 ~ 400945 (-)
cspg5a LOC108256325 coding upstream 72343 404104 ~ 428410 (-)
zp3d.2 NA coding upstream 198554 530315 ~ 535250 (-)
LOC113524795 NA coding upstream 206434 538195 ~ 544033 (-)
alkbh8 alkbh8 coding upstream 266635 598396 ~ 605015 (-)
G324482 NA non-coding downstream 9593 224118 ~ 224913 (-)
G324481 NA non-coding downstream 15456 218778 ~ 219050 (-)
G324465 NA non-coding downstream 143215 90902 ~ 91291 (-)
G324450 NA non-coding downstream 177676 56373 ~ 56830 (-)
G324449 NA non-coding downstream 178720 55495 ~ 55786 (-)
G324516 NA non-coding upstream 22228 353989 ~ 354632 (-)
G324544 NA non-coding upstream 237828 569589 ~ 570151 (-)
G324545 NA non-coding upstream 251131 582892 ~ 583557 (-)
G324549 NA non-coding upstream 303943 635704 ~ 636105 (-)
LOC117595770 NA non-coding upstream 325561 657322 ~ 658118 (-)
LOC113523705 LOC108261200 other downstream 23037 199459 ~ 211469 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other upstream 18977 350738 ~ 396573 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other upstream 42438 374199 ~ 454823 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other upstream 217299 549060 ~ 575271 (-)
G324579 NA other upstream 394866 726627 ~ 727634 (-)
nek11 LOC108256279 other upstream 711552 1043313 ~ 1102117 (-)

Expression


Co-expression Network