slc4a7 (slc4a7,LOC108256322,LOC107686077,LOC107666816)


Basic Information

Item Value
gene id slc4a7
gene name slc4a7,LOC108256322,LOC107686077,LOC107666816
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 350738 ~ 396573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384497
GGAAGCTTCTAGATTTCTGCTTTACGAAGCGAGAGCTCAGCTGGCTGGACGACTTGATGCCAgagagcaagaagaagaaggaggacgACAAGAAGCTCGCCAAAgaggaggCAGAGCGAATGCTGGAGGCTGAGGAAGTGATGGAGTACGACAGCGACAACCTGCTCAGCATCAAAGGCCTCAAAGTCAGcactgACCCGTCTGTAGTCAACATTACTGATGAAATGGCCAAAACCAGTATGTGGAAAGCTGTGAACTCTGACCCCTCCAGAGGGCCCAAATATAGGGAAAGTGATAAAAGCCCTAGTATTAAAATCACAGTGGACGACGCAGAAAGGGGGACATTCGTGGACACGGAGACATCGCTATGACAACAGAGAGAGCAGAACCCCTGagaggagagacggagagagagacggagagagagacggagagagagagagacggagagagagacggagagagagacggagagagagttTCTCACAGCAAATGTGTTCAGGGGGAAACATGCCCACGCTGCTGTGTtttatcatcacacacacacacacacacacacacacacacacacacacacagtatggtGATTAAATGTAAGCGGTGTGTAGCAACAGCGTCATTCGCTGAGGTACGTCATCACACACCCGAGAGCCAGAACGACGCCGGACTGCACAcctcttctgtttttattattattattattattattattattactgtagtGTTTTAAAGGCGAGACGTCCTGCTGTGGGTTTAGCGGCGAGTCTCTCAGTCCGCTGATGATGTAGCGCTACACGCTAAACTGGtagctgcaggtgtgtgttgcGTGTTAGCGACGTTAGCCTCGGAGCTGCAGCGCGTCTCTCCGGTCCTCCGCCTTCAGACCACaactgtttatttacattttatttttgttttaaagttgCGTTTTTGCGGACTGTTAAACCGTGTAAAACTGAAAGGTGGCGTTTacagcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggactctTCACTCTTCACTTCTGTATTTAAGAAATTTAAACGGTTCTGTGTTTAACATCGTCGGAAAATCCGTCACGTCCTGTTTACATAAAATTACACGTTCACGCGTCAGTCGCGCAAgcacgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctgatATTTCATACACTTCAGAAAATCtagaaccattaagggttctccagttgtccctctgggggaactattaaaggttctatgtagaaccctacaattAGAAGTTTACTGTCAGACCGGATTCCAACTGGAGctctgtttttggaaaataaaaaccaGCGAACCCtcaaagaacctttaattatccaacaaactcttaaagaacctttaattatccaacGAACCCtcaaagaacctttaattatccaacaaaccctcaaagaacctttaattatccaacaaactcttaaagaacctttaattatccaacaaactcttaaagaacctttaattagAGTTCTAGATTTTAAGGATTAAATAATGAGCAGTGATCTGGAGTGTGTTCTTCACTTATGCTGTTAGAacaaagggttctttaagggtttcactgaataatgaataattccTCACGTCCAAAAAAAAGCTTCTTCTGATAGGAACCCACTTGTAGTAGAACCTCCTCTGAGAGGGAAATGAGAAGAACCCTGAGCGTTCTAGATGGAAGCGTGTAGTGTCTGTATTGCGGTTTACGTCCCGATGCGCTGTGCGCGCGCAGAACccagtgttagtgctgatgTGAGAATATCGTGACGTCTCGCTCTGTTCTCTTTAAACCTGAAGGGTTCTCCTCACGTTCCTTCCCGCGTTTTCTCTGTGTTCATCTCGGATTAAATCGACTCGTTAGCGCCCCCTCAGGACAGTCACGCCAACGCCGCAGTTGCACCAGAATGtgattgctttctttttttatttcatttttttttaaagaaagataacTGTTACAAACCACGTTGTGCCTggtatttatataaaaacaaacccCAAATTAAaactgtcctgtttttttttttatttagtttttttattcgTACTTTTTAGGCTGCTCAGTTTGAAACTGTTCATTAAGTTATTAGACGTTATTAATGAAgtatttaaagttttattattttagattagaatgaaatttaatttgatatgattcctgatttttttccagcttttgttctgtttttttaagcCGTTTGTTTCTCGGACGTCACGGCGCTCATCATGTCTTCCTTTTGAAGATTCAGAACAAGTATTTTTACTCGACAGTGCTGCAGGTTCTCACAGATCCTCCGCAAAGCTGCTCCTTTTCACACGCGTTTAATCGTATAGATTTTTGTAGCCATCAGCAGACtgtttataaaactgtacagtaaAACTGTTATTCATACAGAGGAGTCGTTTTTTTGTAAAACCTCTAAAAATTGTTCAATAAAAG
>TU384506
GGAAGCTTCTAGATTTCTGCTTTACGAAGCGAGAGCTCAGCTGGCTGGACGACTTGATGCCAgagagcaagaagaagaaggaggacgACAAGAAGCTCGCCAAAgaggaggCAGAGCGAATGCTGGAGGCTGAGGAAGTGATGGAGTACGACAGCGACAACCTGCTCAGCATCAAAGGCCTCAAAGTCAGATCGGACAGCGTGACCTCTGACACCTCGTATGAGGAGGAAGTGACCTCAGCGTGATAAAAGCCCTAGTATTAAAATCACAGTGGACGACGCAGAAAGGGGGACATTCGTGGACACGGAGACATCGCTATGACAACAGAGAGAGCAGAACCCCTGagaggagagacggagagagagacggagagagagagagacggagagagagacggagagagagacgagttTCTCACAGCAAATGTGTTCAGGGGGAAACATGCCCACGCTGCTGTGTgtgtgtgtgtgtgtgcgctgatATTTCATACACTTCAGAAAATCtagaaccattaagggttctccagttgtccctctgggggaactattaaaggttctatgtagaaccctacaattAGAAGTTTACTGTCAGACCGGATTCCAACTGGAGctctgtttttggaaaataaaaaccaGCGAACCCtcaaagaacctttaattatccaacaaactcttaaagaacctttaattatccaacGAACCCtcaaagaacctttaattatccaacaaaccctcaaagaacctttaattatccaacaaactcttaaagaacctttaattatccaacaaactcttaaagaacctttaattatccaacaaactcttaaagaacctttaattagAGTTCTAGATTTTAAGGATTAAATAATGAGCAGTGATCTGGAGTGTGTTCTTCACTTATGCTGTTAGAacaaagggttctttaagggtttcactgaataatgaataattccTCACGTCCAAAAAAAAGCTTCTTCTGATAGGAACCCACTTGTAGTAGAACCTCCTCTGAGAGGGAAATGAGAAGAACCCTGAGCGTTCTAGATGGAAGCGTGTAGTGTCTGTATTGCGGTTTACGTCCCGATGCGCTGTGCGCGCGCAGAACccagtgttagtgctgatgTGAGAATATCGTGACGTCTCGCTCTGTTCTCTTTAAACCTGAAGGGTTCTCCTCACGTTCCTTCCCGCGTTTTCTCTGTGTTCATCTCGGATTAAATCGACTCGTTAGCGCCCCCTCAGGACAGTCACGCCAACGCCGCAGTTGCACCAGAATGtgattgctttctttttttatttcatttttttttaaagaaagataacTGTTACAAACCACGTTGTGCCTggtatttatataaaaacaaacccCAAATTAAaactgtcctgtttttttttttatttagtttttttattcgTACTTTTTAGGCTGCTCAGTTTGAAACTGTTCATTAAGTTATTAGACGTTATTAATGAAgtatttaaagttttattattttagattagaatgaaatttaatttgatatgattcctgatttttttccagcttttgttctgtttttttaagcCGTTTGTTTCTCGGACGTCACGGCGCTCATCATGTCTTCCTTTTGAAGATTCAGAACAAGTATTTTTACTCGACAGTGCTGCAGGTTCTCACAGATCCTCCGCAAAGCTGCTCCTTTTCACACGCGTTTAATCGTATAGATTTTTGTAGCCATCAGCAGACtgtttataaaactgtacagtaaAACTGTTATTCATACAGAGGAGTCGTTTTTTTGTAAAACCTCTAAAAATTGTTCAATAAAAG
>XM_034298019.1
gaccgCGCGCGAGCGAACGGCCAAACGGGCTGTCAGTCAAGcggagtgggcgtggcttggCTCTGCCACATAAATAGCGACGGCTGctgagagaaaaaggaggaaaagcgAGGAGTGAGAGAAAAGTGGTTGTATTCAAATCAGGCGAGACAGGGACGGAAGAAAGAAGTGTGGCTCACATCCGAACAaatggaggaagagaaaggCGAGCAGATGAAGCCTCTGCTAACCACAggtaaTGATGATGAAGCTGTAGTGGACTTGGGGAAGACGAGCTCCACCATCCACACTAACTTTGAGAAGGAGGAGCTTGAAAGTCACAGAGCCGTGTACGTCGGGGTCCATGTCCCATTGGGGCGACAGAGCAGGAGACGGCATCGACATCGAGGACACAGACACCACCGCAAACGGAGAGACAGAGGCTCGGAGCGCGAGGACGGACGAGAGTCGCCCACAtacgacACTCCCTCTCAGCGTGTTCAGTTTATTCTGGGTactgaggatgatgatgaagagcaCATTCCCCACGACCTGTTCACTGAACTGGATGAGCTGCACTTCCTCGAAGGAGAGATGTACGAGTGGAAGGAGATggccaggtggctGAAGTTTGAGGAGGACGTGGAGGATGGAGGTGAGAGGTGGAGTAAGCCGTATGTAGCCACTCTCTCGCTCCACAGCCTGTTCGAGCTCCGCAGCTACATCATGAACGGCACCGTGCTGCTCGACATGAGAGCTAACGCCATCGACGAGATCGCAGACATGATCATCGACAGCATGGTGGCGTCGCAGCAGCTGGACGAGTCTCTGAAGGAGAAGGTTCGGGAGGCCGTGCTGAAGCGACATCATCACCAGAGCGAGAAGAAGCTGAGCAATCGCATCCCGCTCGTGCGCTCCTTCGCCGATATAGGCAAGAAACACTCGGACCCGCACTTACTCGACCGGAacggtcTCATGGCGTCTCCACACTCTGCTCCCGGAGGTCTGGAGAACAGTAAACCCAGTGAGAGTCGGATGAACGGAGGGAGCAGAGAGAACAGCACAGTGGACTTCAGTAAGGTGGATATGAACTTCATGAAGAAGATCCCCCCCGGTGCCGAGGCGTCCAACGTGCTGGTCGGTGAAGTCGACTTTCTGGATCGACCAATCATCGCCTTCGTCCGTCTCTCACCTGCCGTCCTCCTCACCGGCCTCACGGAGGTCCCAGTCCCCAcaaggttCCTGTTTTTGCTCCTCGGACCGTTTGGTAAAGGCTCTCAGTACCATGAGATCGGCCGCTCCATTGCCACACTGATGACTGATGAGattttcCATGACGTAGCGTATAAGGCTAAAGACAGGAACGACCTGCTGTCCGGGATCGATGAGTTTCTGGATCAGGTGACGGTTCTGCCGCCGGGCGAGTGGGACCCCACCATCCGCATAGAACCTCCTAAAAATGTCCCGTCTCAGgagaaaAGGAAGATGCCGGTGCCAAATGGCCCCGCCCCCCAGTCTGAGGTTGTCAAAGAGGAGGAGCATCACACGGGACCAGAACTGAAGAGGACAGGACGgttatTTGGTGGTCTGGTGTTGGATGTGAAGAGGAAAGCTCCGTTTTATTGGAGTGATGTGCGTGATGCGTTCAGTCTGCAGTGTTTGGCGTCGGTGTTGTTCCTGTACTGCGCCTGCATGTCTCCCGTCATCACGTTCGGTGGCCTGCTGGGAGAAATCACCAAGAACAACATCGTGAGTTTCTCCATCAGGTTCTTCAGGATGTGTGGAGTGCACTACTGAGCCACAAGTGTGTCTCCCCTCACGATCCTGGGCAGCACCGGTCCGGTTCTGGTGTTTGAGAAAATCCTCTTCAAGTTCTGCAGtgATTACGGCCTGTCCTACCTCCCCCTGCGCACCAGTATCGGGTTGTGGACGGCGTTcctgtgtgtggtgttggtggCGACAGACGCGAGCTCTCTGGTGTGTTACATCACGCGGTTCACGGAGGAAGCCTTCGCCGCTCTCATCTGCATCATCTTCATCTACGAGGCGTTGGAGAAGCTCTTCCACCTGAGCGACATGTTCCCCATCAACATGCACAACGACCTGGACAACCTGACCTTCTACAGgtgtcAGTGCTCTCCACCTTTGAATGCTACATCTGAGCTCACAAACCTGTGGAATCAGAGCGGCTTCACTCCCGACTCCATCAACTGGAGTGAACTGGATGTGACTATGTGTAAGAAGCTGCAGGGTGTGTTTGTGGGTCCGGCGTGCAGCGCTCACGGCCCCTTCATCCCCGACGTCCTGTTCTGGTCCATCATCCTCTTCTTCACCACCTTCTTCCTCTCCGCCTTCCTCAAACAGTTCAGGACCAAACGCTACTTTCCCACCAGGGTTCGCTCCACGATCAGCGATTTTGCGGTTTTTCTCACCATCATGTTCATGGTGCTGTTGGATTACCTGGTGGGGATTCCTTCACCCAAACTCAATGTCCCTGACACCTtcgagcccACCTCTAAAGGCCGCGGCTGGTGGATGACTCCGTTGGGTTCGAATCCCTGGTGGACGCTGTTAGCAGCAGTGATTCCTGCTCTGCTCTGCACCATCCTCATCTTCATGGACCAGCAGATCACCGCCGTCATCATCAACCGCAAAGAGCACAAGCTcaagaaaggCTGTGGGTATCACCTGGACCTTCTGGTGGTGGCCGTGATGCTGGGCGTGTGCTCTCTGATGGGCTTGCCGTGGTTCGTAGCTGCCACCGTTCTCTCCATCTCGCATGTGAACTCTCTGAAGGTGGAGTCTCAGTGCTCAGCTCCGGGGGAACAGCCCAAATTCCTGGGAATCAGAGAGCAGAGAGTCACCGGCTTCATGATCTTCGTCCTCATGGGCTTATCCGTCTTCATGACCTCCGTGCTcaagtTCATCCCCATGCCGGTGCTGTATGGAGTTTTCCTCTACATGGGCTTCTCATCCCTTAAAGGCATCCAGTTCTTTGACCGCATTAAGCTGTTCGGGATGCCCGCTAAGCACCAGCCTGACCTGATCTACCTGCGCTACGTTCCTCTGTGGAAGGTCCACGTGTTCACCTTCGTCCAGCTCACCTGCCTCGTGCTGCTGTGGATCATCAAAGCCTCGGCCGCCGCCGTCGTCTTCCCCATGATGGTAAACGCTTACATCATTACACGGAAGCTTCTAGATTTCTGCTTTACGAAGCGAGAGCTCAGCTGGCTGGACGACTTGATGCCAgagagcaagaagaagaaggaggacgACAAGAAGCTCGCCAAAgaggaggCAGAGCGAATGCTGGAGGCTGAGGAAGTGATGGAGTACGACAGCGACAACCTGCTCAGCATCAAAGGCCTCAAAGTCAGcactgACCCGTCTGTAGTCAACATTACTGATGAAATGGCCAAAACCAGTATGTGGAAAGCTGTGAACTCTGACCCCTCCAGAGGGCCCAAATATAGGGAAAGTGATAAAAGCCCTAGTATTAAAATCACAGTGGACGACGCAGAAAGGGGGACATTCGTGGACACGGAGACATCGCTATGACAACAGAGAGAGCAGAACCCCTGagaggagagacggagagagagacggagagagagagagacggagagagagacggagagagagacggagagagagagagacggagagagagacggagagagagacggagagagagttTCTCACAGCAAATGTGTTCAGGGGGAAACATGCCCACGCTGCTGTGTtttatcatcacacacacacacacacacacacacacacacacacacacacagtatggtGATTAAATGTAAGCGGTGTGTAGCAACAGCGTCATTCGCTGAGGTACGTCATCACACACCCGAGAGCCAGAACGACGCCGGACTGCACAcctcttctgtttttattattattattattattattattattactgtagtGTTTTAAAGGCGAGACGTCCTGCTGTGGGTTTAGCGGCGAGTCTCTCAGTCCGCTGATGATGTAGCGCTACACGCTAAACTGGtagctgcaggtgtgtgttgcGTGTTAGCGACGTTAGCCTCGGAGCTGCAGCGCGTCTCTCCGGTCCTCCGCCTTCAGACCACaactgtttatttacattttatttttgttttaaagttgCGTTTTTGCGGACTGTTAAACCGTGTAAAACTGAAAGGTGGCGTTTacagcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggactctTCACTCTTCACTTCTGTATTTAAGAAATTTAAACGGTTCTGTGTTTAACATCGTCGGAAAATCCGTCACGTCCTGTTTACATAAAATTACACGTTCACGCGTCAGTCGCGCAAgcacgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctgatATTTCATACACTTCAGAAAATCtagaaccattaagggttctccagttgtccctctgggggaactattaaaggttctatgtagaaccctacaattAGAAGTTTACTGTCAGACCGGATTCCAACTGGAGctctgtttttggaaaataaaaaccaGCGAACCCtcaaagaacctttaattatccaacaaactcttaaagaacctttaattatccaacGAACCCtcaaagaacctttaatta

Function

symbol description
slc4a7 Predicted to enable inorganic anion exchanger activity. Predicted to act upstream of or within anion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC4A7 (solute carrier family 4 member 7).

NR:

description
PREDICTED: sodium bicarbonate cotransporter 3-like isoform X2

GO: NA

KEGG:

id description
K13861 SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
TU384497 False 2548 TUCP 0.43 7 350738 356621
TU384506 False 1809 TUCP 0.41 7 350738 356621
XM_034298019.1 True 4683 mRNA 0.53 25 351887 396573

Neighbor

gene id symbol gene type direction distance location
azi2 azi2,LOC107570847,LOC108261202 coding downstream 147001 194648 ~ 203737 (-)
eomesb LOC108256235 coding downstream 192159 148605 ~ 158579 (-)
kdf1a LOC108256236 coding downstream 203600 137689 ~ 147138 (-)
LOC113525569 pttg coding downstream 289186 58422 ~ 61552 (-)
cdk14 cdk14 coding downstream 292976 37985 ~ 57762 (-)
pkdc LOC108256330 coding upstream 459 397032 ~ 400945 (-)
cspg5a LOC108256325 coding upstream 7531 404104 ~ 428410 (-)
zp3d.2 NA coding upstream 133742 530315 ~ 535250 (-)
LOC113524795 NA coding upstream 141622 538195 ~ 544033 (-)
alkbh8 alkbh8 coding upstream 201823 598396 ~ 605015 (-)
G324498 NA non-coding downstream 28870 297235 ~ 321868 (-)
G324504 NA non-coding downstream 31735 315399 ~ 319003 (-)
G324488 NA non-coding downstream 101023 247960 ~ 249715 (-)
G324482 NA non-coding downstream 125825 224118 ~ 224913 (-)
G324481 NA non-coding downstream 131688 218778 ~ 219050 (-)
G324544 NA non-coding upstream 173016 569589 ~ 570151 (-)
G324545 NA non-coding upstream 186319 582892 ~ 583557 (-)
G324549 NA non-coding upstream 239131 635704 ~ 636105 (-)
LOC117595770 NA non-coding upstream 260749 657322 ~ 658118 (-)
G324562 NA non-coding upstream 284275 680848 ~ 681481 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 18977 234506 ~ 331761 (-)
LOC113523705 LOC108261200 other downstream 139269 199459 ~ 211469 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other upstream 152487 549060 ~ 575271 (-)
G324579 NA other upstream 330054 726627 ~ 727634 (-)
nek11 LOC108256279 other upstream 646740 1043313 ~ 1102117 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 898292 1294865 ~ 1342071 (-)
G324748 NA other upstream 973903 1370476 ~ 1371029 (-)

Expression


Co-expression Network