Gene
RNA
| Item | Value |
|---|---|
| gene id | G324516 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 353989 ~ 354632 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU384525 | True | 553 | lncRNA | 0.43 | 2 | 353989 | 354632 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| azi2 | azi2,LOC107570847,LOC108261202 | coding | downstream | 150252 | 194648 ~ 203737 (-) |
| eomesb | LOC108256235 | coding | downstream | 195410 | 148605 ~ 158579 (-) |
| kdf1a | LOC108256236 | coding | downstream | 206851 | 137689 ~ 147138 (-) |
| LOC113525569 | pttg | coding | downstream | 292437 | 58422 ~ 61552 (-) |
| cdk14 | cdk14 | coding | downstream | 296227 | 37985 ~ 57762 (-) |
| pkdc | LOC108256330 | coding | upstream | 42400 | 397032 ~ 400945 (-) |
| cspg5a | LOC108256325 | coding | upstream | 49472 | 404104 ~ 428410 (-) |
| zp3d.2 | NA | coding | upstream | 175683 | 530315 ~ 535250 (-) |
| LOC113524795 | NA | coding | upstream | 183563 | 538195 ~ 544033 (-) |
| alkbh8 | alkbh8 | coding | upstream | 243764 | 598396 ~ 605015 (-) |
| G324498 | NA | non-coding | downstream | 32121 | 297235 ~ 321868 (-) |
| G324504 | NA | non-coding | downstream | 34986 | 315399 ~ 319003 (-) |
| G324488 | NA | non-coding | downstream | 104274 | 247960 ~ 249715 (-) |
| G324482 | NA | non-coding | downstream | 129076 | 224118 ~ 224913 (-) |
| G324481 | NA | non-coding | downstream | 134939 | 218778 ~ 219050 (-) |
| G324544 | NA | non-coding | upstream | 214957 | 569589 ~ 570151 (-) |
| G324545 | NA | non-coding | upstream | 228260 | 582892 ~ 583557 (-) |
| G324549 | NA | non-coding | upstream | 281072 | 635704 ~ 636105 (-) |
| LOC117595770 | NA | non-coding | upstream | 302690 | 657322 ~ 658118 (-) |
| G324562 | NA | non-coding | upstream | 326216 | 680848 ~ 681481 (-) |
| herpud2 | LOC108256328,LOC108431059,LOC107666842 | other | downstream | 22228 | 234506 ~ 331761 (-) |
| LOC113523705 | LOC108261200 | other | downstream | 142520 | 199459 ~ 211469 (-) |
| smarcc1a | smarcc1,LOC107600486,LOC107666814,LOC107686050 | other | upstream | 19567 | 374199 ~ 454823 (-) |
| dyrk1b | dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 | other | upstream | 194428 | 549060 ~ 575271 (-) |
| G324579 | NA | other | upstream | 371995 | 726627 ~ 727634 (-) |
| nek11 | LOC108256279 | other | upstream | 688681 | 1043313 ~ 1102117 (-) |
| scap | scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 | other | upstream | 940233 | 1294865 ~ 1342071 (-) |
