G324729 (LOC108256269,LOC108256268,LOC108256164,LOC108256276)


Basic Information

Item Value
gene id G324729
gene name LOC108256269,LOC108256268,LOC108256164,LOC108256276
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1126844 ~ 1127617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384808
ATAACagctcatcaaacaccaactcaGACTTTGAGTACGCTGGAGACAACAAATCAAACTGCACTTTGTTAATCCACAATCTACAGTCCAGTTATTCTGGAACATACAAATTCAGATTTATAACTAATGTGACCAAATGCAAATGGACCGGTGAACCTGGAGTGATTCTACAAGTTGCAGATTTAAAGGTGTCACTAATCAGGCTCAGTGGAAACGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384808 True 220 lncRNA 0.40 2 1126844 1127617

Neighbor

gene id symbol gene type direction distance location
si:dkey-11p23.7 siglec15 coding downstream 206935 915919 ~ 919909 (-)
LOC113525074 NA coding downstream 224582 897326 ~ 902262 (-)
ubxn11 ubxn11 coding downstream 270111 847835 ~ 856733 (-)
mtdhb LOC108256290 coding downstream 294923 820622 ~ 831921 (-)
scn1ba LOC108256230,LOC108437383 coding downstream 355871 752642 ~ 770973 (-)
LOC113533061 LOC108256273 coding upstream 145776 1273393 ~ 1275839 (-)
LOC113532917 NA coding upstream 153829 1281446 ~ 1285879 (-)
LOC113532999 LOC108261539 coding upstream 159372 1286989 ~ 1295529 (-)
elp6 elp6 coding upstream 215362 1342979 ~ 1346644 (-)
sacm1lb sacm1lb,sacm1l,LOC108256262,LOC108412214,LOC107673333,LOC107709536 coding upstream 220412 1348029 ~ 1359488 (-)
G324649 NA non-coding downstream 171452 880609 ~ 955392 (-)
G324650 NA non-coding downstream 244558 881639 ~ 882286 (-)
G324622 cep85 non-coding downstream 284222 842266 ~ 842622 (-)
G324616 NA non-coding downstream 312511 812339 ~ 814333 (-)
G324602 NA non-coding downstream 334357 791946 ~ 792487 (-)
G324731 NA non-coding upstream 16969 1144586 ~ 1169331 (-)
LOC117595768 NA non-coding upstream 541485 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 596393 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 620040 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 770094 1897711 ~ 1898181 (-)
nek11 LOC108256279 other downstream 24727 1043313 ~ 1102117 (-)
G324579 NA other downstream 399210 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 551573 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 672021 374199 ~ 454823 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 730271 350738 ~ 396573 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 167248 1294865 ~ 1342071 (-)
G324748 NA other upstream 242859 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 275647 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 429399 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 960642 2088259 ~ 2097435 (-)

Expression


Co-expression Network