LOC117595768


Basic Information

Item Value
gene id LOC117595768
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1669102 ~ 1674907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384971
GGAGAAGGCAGCATGTGACAGCACTTGGGCACGTCAGACGCTTGGACGACCTCCTGGAGCTCCATGTTCTCCTTGAGTTCTCCCTCATGGTGGTGAGGGTGGTACAATCTCGTGAGATGTTACAGCTCCACATTTACATCTGAGCAGaagtaaatctgtaaatctgctgtttgatatttttttctttcatattccACTGCTGTGATCTGTTCTCCAGCCTTTCAAAGAGTCAGTGCTCTCCCACGCCTGGGGCAGGGAGGAGTTTTTCTTCAAGGTAAAAGGAAAGACAGATATGTCTATGTACACTTCCTGGGTGTCGCATCCAGCACGTATCCACGCACTGTTCACCTGAAGAGCATCATATCCTGCGGAACAGGGAGACAGGAACCGGGAAAGATGAGCCGTTTCGCACTGCTCGTTCTCCTGacagTTTTCAGTGCACTCTTCAGTGAAGCTGCAGCAAATCCATTTGTTTACAactaTGACAGGCTGAGGATTGGAGGCATTATCTTCACAGTCATGCTTGTAATAGGAGCTATTGTACTCCTTTTTTATGACAAATGCGGCACAAAGAAGAAAACCGATGATGCTGCCAGTCAGATTTAGACACGCCATGACATCAGACTGTGAATTATGGAAGTTCTGCAGTTTGGACGAGAACAATGTTTTTTATGGTAGCTGGTAAAAACAGGCCTATTTGGATGTGGAGCATCTGATTCAGGGATGAACCATCTCACTCTGAAGTTATTTATCCTAATTCAAGTGCTTTTGCACTTAATAAAATAACCTGGAGCCTTTATCTCTTGATGCtccttttaaaatcttttaatggGGTTAATTTAATAGTTTAGCATCAGATACAGAGTTAATAAAGTAGTCAAATGTTATGTTGTTTAGATATTTAGAAATCCATTTGAACTCTAGTCTGTAGTCTGGCTTCATGAAAATGTAACATAACAGTATATTAAACCTGCAGTATGATTTAATactaaattcttttttttttttatttgttaatctAAGAGACTTTTGCATGCAataacatacaaaaatattcacataaatcttaaaatttatataattctAACCCACtgaaatcaatcaatcaatcaatcaatcaatcaattaacaCTTGCCATAAAACATTAAGGCTTAAAAAGCAACAAGTAggtgtttct
>TU384972
GGAGAAGGCAGCATGTGACAGCACTTGGGCACGTCAGACGCTTGGACGACCTCCTGGAGCTCCATGTTCTCCTTGAGTTCTCCCTCATGGTGGTGAGGGTGGTACAATCTCGTGAGATGTTACAGCTCCACATTTACATCTGAGCAGaagtaaatctgtaaatctgctgtttgatatttttttctttcatattccACTGCTGTGATCTGTTCTCCAGCCTTTCAAAGAGTCAGTGCTCTCCCACGCCTGGGGCAGGGTAAAAGGAAAGACAGATATGTCTATGTACACTTCCTGGGTGTCGCATCCAGCACGTATCCACGCACTGTTCACCTGAAGAGCATCATATCCTGCGGAACAGGGAGACAGGAACCGGGAAAGATGAGCCGTTTCGCACTGCTCGTTCTCCTGacagTTTTCAGTGCACTCTTCAGTGAAGCTGCAGCAAATCCATTTGTTTACAactaTGACAGGCTGAGGATTGGAGGCATTATCTTCACAGTCATGCTTGTAATAGGAGCTATTGTACTCCTTTTTTATGACAAATGCGGCACAAAGAAGAAAACCGATGATGCTGCCAGTCAGATTTAGACACGCCATGACATCAGACTGTGAATTATGGAAGTTCTGCAGTTTGGACGAGAACAATGTTTTTTATGGTAGCTGGTAAAAACAGGCCTATTTGGATGTGGAGCATCTGATTCAGGGATGAACCATCTCACTCTGAAGTTATTTATCCTAATTCAAGTGCTTTTGCACTTAATAAAATAACCTGGAGCCTTTATCTCTTGATGCtccttttaaaatcttttaatggGGTTAATTTAATAGTTTAGCATCAGATACAGAGTTAATAAAGTAGTCAAATGTTATGTTGTTTAGATATTTAGAAATCCATTTGAACTCTAGTCTGTAGTCTGGCTTCATGAAAATGTAACATAACAGTATATTAAACCTGCAGTATGATTTAATactaaattcttttttttttttatttgttaatctAAGAGACTTTTGCATGCAataacatacaaaaatattcacataaatcttaaaatttatataattctAACCCACtgaaatcaatcaatcaatcaatcaatcaatcaattaacaCTTGCCATAAAACATTAAGGCTTAAAAAGCAACAAGTAggtgtttct
>TU384975
GGAGAAGGCAGCATGTGACAGCACTTGGGCACGTCAGACGCTTGGACGACCTCCTGGAGCTCCATGTTCTCCTTGAGTTCTCCCTCATGGTGGTGAGGGTGGTACAATCTCGTGAGATGTTACAGCTCCACATTTACATCTGAGCAGaaGAGGAGTTTTTCTTCAAGGTAAAAGGAAAGACAGATATGTCTATGTACACTTCCTGGGTGTCGCATCCAGCACGTATCCACGCACTGTTCACCTGAAGAGCATCATATCCTGCGGAACAGGGAGACAGGAACCGGGAAAGATGAGCCGTTTCGCACTGCTCGTTCTCCTGacagTTTTCAGTGCACTCTTCAGTGAAGCTGCAGCAAATCCATTTGTTTACAactaTGACAGGCTGAGGATTGGAGGCATTATCTTCACAGTCATGCTTGTAATAGGAGCTATTGTACTCCTTTTTTATGACAAATGCGGCACAAAGAAGAAAACCGATGATGCTGCCAGTCAGATTTAGACACGCCATGACATCAGACTGTGAATTATGGAAGTTCTGCAGTTTGGACGAGAACAATGTTTTTTATGGTAGCTGGTAAAAACAGGCCTATTTGGATGTGGAGCATCTGATTCAGGGATGAACCATCTCACTCTGAAGTTATTTATCCTAATTCAAGTGCTTTTGCACTTAATAAAATAACCTGGAGCCTTTATCTCTTGATGCtccttttaaaatcttttaatggGGTTAATTTAATAGTTTAGCATCAGATACAGAGTTAATAAAGTAGTCAAATGTTATGTTGTTTAGATATTTAGAAATCCATTTGAACTCTAGTCTGTAGTCTGGCTTCATGAAAATGTAACATAACAGTATATTAAACCTGCAGTATGATTTAATactaaattcttttttttttttatttgttaatctAAGAGACTTTTGCATGCAataacatacaaaaatattcacataaatcttaaaatttatataattctAACCCACtgaaatcaatcaatcaatcaatcaatcaatcaattaacaCTTGCCATAAAACATTAAGGCTTAAAAAGCAACAAGTAggtgtttct
>XR_004576938.1
CAGCATGTGACAGCACTTGGGCACGTCAGACGCTTGGACGACCTCCTGGAGCTCCATGTTCTCCTTGAGTTCTCCCTCATGGTGGTGAGGGTGGTACAATCTCGTGAGATGTTACAGCTCCACATTTACATCTGAGCAGaagtaaatctgtaaatctgctgtttgatatttttttctttcatattccACTGCTGTGATCTGTTCTCCAGCCTTTCAAAGAGTCAGTGCTCTCCCACGCCTGGGGCAGGGTAAATCTGCTGTTTCACATCTCTCTTCTCCCAGAATTATAAGTTGGAGGAGTTTTTCTTCAAGGTAAAAGGAAAGACAGATATGTCTATGTACACTTCCTGGGTGTCGCATCCAGCACGTATCCACGCACTGTTCACCTGAAGAGCATCATATCCTGCGGAACAGGGAGACAGGAACCGGGAAAGATGAGCCGTTT
>XR_004576939.1
CAGCATGTGACAGCACTTGGGCACGTCAGACGCTTGGACGACCTCCTGGAGCTCCATGTTCTCCTTGAGTTCTCCCTCATGGTGGTGAGGGTGGTACAATCTCGTGAGATGTTACAGCTCCACATTTACATCTGAGCAGaagtaaatctgtaaatctgctgtttgatatttttttctttcatattccACTGCTGTGATCTGTTCTCCAGCCTTTCAAAGAGTCAGTGCTCTCCCACGCCTGGGGCAGGGAGGAGTTTTTCTTCAAGGTAAAAGGAAAGACAGATATGTCTATGTACACTTCCTGGGTGTCGCATCCAGCACGTATCCACGCACTGTTCACCTGAAGAGCATCATATCCTGCGGAACAGGGAGACAGGAACCGGGAAAGATGAGCCGTTT
>XR_004576940.1
CAGCATGTGACAGCACTTGGGCACGTCAGACGCTTGGACGACCTCCTGGAGCTCCATGTTCTCCTTGAGTTCTCCCTCATGGTGGTGAGGGTGGTACAATCTCGTGAGATGTTACAGCTCCACATTTACATCTGAGCAGaagtaaatctgtaaatctgctgtttgatatttttttctttcatattccACTGCTGTGATCTGTTCTCCAGCCTTTCAAAGAGTCAGTGCTCTCCCACGCCTGGGGCAGGGTAAAAGGAAAGACAGATATGTCTATGTACACTTCCTGGGTGTCGCATCCAGCACGTATCCACGCACTGTTCACCTGAAGAGCATCATATCCTGCGGAACAGGGAGACAGGAACCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384971 True 1178 lncRNA 0.39 8 1669102 1674907
TU384972 False 1160 lncRNA 0.39 8 1669102 1674907
TU384975 False 1071 lncRNA 0.38 8 1669102 1674907
XR_004576938.1 False 445 lncRNA 0.47 3 1671701 1674899
XR_004576939.1 False 399 lncRNA 0.49 3 1671701 1674899
XR_004576940.1 False 366 lncRNA 0.49 3 1671716 1674899

Neighbor

gene id symbol gene type direction distance location
LOC113533022 fxyd1,LOC108433901,LOC108256298,LOC103360964,LOC107728489 coding downstream 1365 1650037 ~ 1667737 (-)
LOC113532527 NA coding downstream 30483 1631443 ~ 1638619 (-)
LOC113532853 atp4a coding downstream 42542 1608001 ~ 1626560 (-)
gapdhs g3pt,gapdhs,LOC107577408,LOC107709572,LOC107686531 coding downstream 62413 1593470 ~ 1606689 (-)
LOC117595786 LOC108256309,LOC108256308,LOC108261853 coding downstream 78915 1577798 ~ 1590187 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 11796 1686703 ~ 1708246 (-)
si:dkey-33i11.1 fcgr2a coding upstream 39368 1714275 ~ 1718593 (-)
rgl2 LOC108256293,LOC108433895 coding upstream 60710 1735617 ~ 1763406 (-)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding upstream 277923 1952830 ~ 1976952 (-)
LOC113532949 apoa2 coding upstream 335282 2010189 ~ 2011797 (-)
G324726 NA non-coding downstream 483025 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 499771 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 541485 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 713710 880609 ~ 955392 (-)
G324650 NA non-coding downstream 786816 881639 ~ 882286 (-)
G324970 NA non-coding upstream 49103 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 72750 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 222804 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 232036 1906943 ~ 1948211 (-)
G325058 NA non-coding upstream 244364 1919271 ~ 1920472 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 100596 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 218102 1403264 ~ 1451000 (-)
G324748 NA other downstream 298073 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 327031 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 566985 1043313 ~ 1102117 (-)
G325145 mtmr11 other upstream 413352 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1555114 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1644637 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 2045782 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 2282590 3957497 ~ 3966115 (-)

Expression


Co-expression Network