G325076 (apoa2)


Basic Information

Item Value
gene id G325076
gene name apoa2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1993256 ~ 2011981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU385235
tgaaaaattaaGTGAATTTTGAATCAGTGAAAAAGTCAcaggagaaatgaaatgaatcatgttgaaaaaatcatgtgaaaaatagaTTAATCATGTGAGAGACATCACCTGAAAAGTTAAtcatgtggagaaaaaaatgacatgaaaataaaatgaataatggGGGGTTTGTTGCCTTACATATGAAAAACGagtcagtgaaaaaaaattaatttgggggaaaaaagacgtgaaaatgaatcagtgaaaaagaatcatgtgaaaaatagaTGAATCATCTGAGAAACAgcacatgaaaaatgaatcatgtagtaaaacaaatcacatgaaaaaaaagaatcatgtcTGAGggaattacatgtgaaaaatgaatcaataaaaacatcatgtaaaaaataaatgaatcaagtggagaaaaaattcacatgtgaaataaatgtatcatggagacaaaaaaatcacatccaTGAAAAACAGATGAGTCATGTGACACATCAGGcggaaataaatgaaacatgggGGAGGATTCAtatgagaaaatgaatcagtgaaaaattaacgtgaaaataaattaattatgtgAATGAAACATAacgtgtgtaaaaaaaaaaagggtgtaaATTTCAGTTGCTTTTAGATTCCCATTATAAGTAAGTTTAGTTAGtgttaaatatgttttcttttttagtgaAGAGCAACAGCTTgaaatataatcacacacacacacacacacacacactatacatgcAGTGGTTagggtttaaaaaaaggttagagttttcctttaagctaGCACAACCTAgctgataaacacacaaacatgcgaATAGACAGTAATAATAGTCAACACAAATGTAAAGCCTTTCAACCCCTTTATTGCTTCAGATAGGTGAGTGATGTCAGTCACAGGGCGGTGGTGATTTCCCATCAggcttttttcagtgttttgtttgttttttactgaGGGGGCAGGATGGCCTTGGTCTGATCAACCACGAACCTGAGCATGTCCTCGATCTGGCTCTGCATCAGGTTGGTGTAGGGGGCGATCTGAGCGCGGACGGAGGCGGCCAGAGGCTCGATCTGCTCCTCGATGTTGCTGGAGAGGGGCTTCAGCTGCTCCTGGAGCTTCTCAACCACGGGCTGGAGCTGGGCTCTGCTCTCCTCCATGTAAGccctgaacaaacacacacgcTTGGCCTTGTTGGCCAGCTCAGGGGCCTCGAGGGCTTTAAGGTTTTGGACGAGGTCCTGGAAGTAACTGGCGATCTTTTCAACCTCAGGAGGCATTTCAGGACTTTCTCTCTTGACCAGGCTGGCAGCTTGGGAGCGATGGCCAGCGCGATGACGAGGGCGGCGATGAGGGAGAACTTCATGGCTGCAGACTGAGCAAGGTTTGCCTaggatataaacctgtggttacTAGTGTAAATACAGAGAATATGGATGAAATTCTGAAGTAAAATTCAATCTAAATATGTCCATAAGAATGCAAAATGACTTCTTACCTTCACTCCTGAATGTCTAGGACCTGATGGTGCGTTCTTTCAGGAGCCAGACCTTTTTATAGCAGCTCCAGAGGTCAAAGGATGATAACGGGTTGACGACATCAGCCTGATGAAGTGTGTAAATGCTGTGTTGGCTGCCGAACCTTGAGGCTTTACTTGACACTGAGGTGATCGAGTCAAAGTTCAACTATCTGAACCCCccaccctctttctctctctgtctctctctttcactttatcatttttaaatcatgaaaT
>TU385237
ttttttttttttttttttttttAAGCCTTTCAACCCCTTTATTGCTTCAGATAGGTGAGTGATGTCAGTCACAGGGCGGTGGTGATTTCCCATCAggcttttttcagtgttttgtttgttttttactgaGGGGGCAGGATGGCCTTGGTCTGATCAACCACGAACCTGAGCATGTCCTCGATCTGGCTCTGCATCAGGTTGGTGTAGGGGGCGATCTGAGCGCGGACGGAGGCGGCCAGAGGCTCGATCTGCTCCTCGATGTTGCTGGAGAGGGGCTTCAGCTGCTCCTGGAGCTTCTCAACCACGGGCTGGAGCTGGGCTCTGCTCTCCTCCATGTAAGccTGGCCTTGTTGGCCAGCTCAGGGGCCTCGAGGGCTTTAAGGTTTTGGACGAGGTCCTGGAAGTAACTGGCGATCTTTTCAACCTCAGGAGGCATTTCAGGACTTTCTCTCTTGACCAGGCTGGCAGCTTGGGAGcctgtttaaaaacaaaacaaaatcattcTTTTACTGTCTGATTAAAACTACACGACTGTTGtaatactgttttgttttgagttttttttgtattttaaaagcataaaaatctCACCGATGGCCAGCGCGATGACGAGGGCGGCGATGAGGGAGAACTTCATGGCTGCAGACTGAGCAAGGTTTGCCTaggatataaacctgtggttacTAGTGTAAATACAGAGAATATGGATGAAATTCTGAAGTAAAATTCAATCTAAATATGTCCATAAGAATGCAAAATGACTTCTTACCTTCACTCCTGAATGTCTAGGACCTGATGGTGCGTTCTTTCAGGAGCCAGACCTTTTTATAGCAGCTCCAGAGGTCAAAGGATGATAACGGGTTGACGACATCAGCCTGATGAAGTGTGTAAATGCTGTGTTGGCTGCCGAACCTTGAGGCTTTACTTGACACTGAGGTGATCGAGTCAAAGTTCAACTATCTGAACCCCccaccctctttctctctctgtctctctctttcactttatcatttttaaatcatgaaaT

Function

symbol description
apoa2 Acts upstream of or within chordate embryonic development; epiboly involved in gastrulation with mouth forming second; and nuclear division. Is expressed in liver and yolk syncytial layer.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385235 True 1766 lncRNA 0.40 3 2009334 2011981
TU385237 False 1027 lncRNA 0.46 3 1993256 2011981

Neighbor

gene id symbol gene type direction distance location
paqr6 paqr6,LOC106605285 coding upstream 49966 1925582 ~ 1943290 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding upstream 94866 1796355 ~ 1898390 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding upstream 204972 1770828 ~ 1788284 (+)
dnase2 LOC108256294 coding upstream 259125 1724131 ~ 1734131 (+)
LOC113532957 LOC108256297 coding upstream 279864 1708432 ~ 1713392 (+)
rbm8a rbm8a,LOC107671476 coding downstream 2630 2014611 ~ 2019052 (+)
otud7b otud7b,LOC107726676 coding downstream 9434 2021415 ~ 2055739 (+)
mtmr11 mtmr11,LOC107726680,LOC107592143,LOC107671475 coding downstream 47559 2059540 ~ 2091481 (+)
sv2a sv2a,LOC107688240,LOC107592458 coding downstream 92807 2104788 ~ 2139998 (+)
nr2f5 nr2f5,LOC108256176,LOC103038004,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC105891836,LOC107671473,LOC100380645 coding downstream 156737 2168718 ~ 2183436 (+)
G324947 NA non-coding upstream 60930 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 254001 1735619 ~ 1739255 (+)
G324842 NA non-coding upstream 325413 1667560 ~ 1667843 (+)
G324831 NA non-coding upstream 337395 1655128 ~ 1655861 (+)
G324832 NA non-coding upstream 339666 1652671 ~ 1653590 (+)
G325089 NA non-coding downstream 8203 2020184 ~ 2020388 (+)
G325247 NA non-coding downstream 322898 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 384692 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 388489 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 632060 2644041 ~ 2647583 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 73546 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 829642 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 983033 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 1186728 774289 ~ 806528 (+)
G324206 NA other upstream 1244781 745673 ~ 748475 (+)
bola1 bola1,LOC107592543 other downstream 130211 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 192865 2204846 ~ 2215410 (+)
G325435 NA other downstream 553719 2565700 ~ 2569739 (+)
hamp NA other downstream 1999399 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2379539 4391520 ~ 4394784 (+)

Expression


Co-expression Network