LOC113532493


Basic Information

Item Value
gene id LOC113532493
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2055183 ~ 2142077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU385304
GCATAATCTAATGCCATAATCatgaaaaatacttttttttttttagaaactctAATGActattttaaaccttttcttCAAGTCAATAATTACAATGGCAATCATTTTATCTCCATGAcacaggtttatttttcatACGTATGTTTTCATTTCACCAAAGACCAGGACTTGTTCACTGCGTGATTGCAGTAAAATTCCCATCATGACTgaaaaagtctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacgaatactGACTTCTTCATCCCTTTGCCTTCCTCAGTGTCCCGCAAACCCTATACATTCTCATCgttaaaaacactgtaaaactgCTTTCACTTTACAAAAATAACTCAAACGTATTTGTACAACcactgtctttttgttttttttaatataaaaaaaggtttgtgattgtgtgttgtgttctgtAAAGACAAATGTTAGctacaggaaagaaaaaaaaaacagaaactgaaaaacagaaacactcagttgaattttttttgggATGAGTTCTGTTTGTGGATTTAAACTGTAATACTTTAAAGAGGACATtatactcactctctctctctctctctc
>XR_003403348.2
catgttattaaataaagattgaAAGAGTAGTCGGAAGCTTAGTGGTGGTGACGTTGAAATCATGCGACGGTGGTGTAGTTCGTTTATAGCCTAACTTTAGCTCTTTACGTCTTGTATTGTATTTAGGCTTCAAAATTCATAAAACTTGTGTTCATTTGTGAAGATTATCTTGATGAACAAAAAATAGGTTGTATATATCTCATCATCAATCCCTTCCAGTCTGCCTGTGGTCAGTGTCCTCCAGCCTGCATGTTTAACTTCCTGTCACGCTTGCTTGTGGTCAGTCAGGAAGGAGAAGGAGCAGCAGAGCTAAAGAAAGCCCAAGAGATCCAGAGGGAGATGGTGCTGTTCGATGTACCTTTTGTCACCAAAACAGCAGAAAGACGGAGTACAGCAAAAAATCAGAGttttggtgagtctgtgcccactgtagcctcagattcctgtttttgagagcaggagtgaaacctgatgtggtctcgTAGCTGTCTTCAGTCATGGaccaacatgttgtgcattctgagatgcttttctactcaccacggctataaagagtggttatttgaattaccaTAGACTGCCTTGTCAGCTTAAACCAGCctggccgttctcctctgaACATCAACAAGGCGTctccgcccacagaactgccgcttaCTGGATGattgttgtttttcacaccattctgtctaaactctagagactgtagtgagtgaaaatcccaagagatttCCGAAATATTCAAACTGACACCACTGagatttttcccccattctgatgtttgatgtgaacatttactAAAGCTCTCTCCCTGTATCTGCACGAATGTATGCACTGCTCTggtgctacatgattggctgattagatcgGTGCATGAAAGtgaaggtgtacaggtgttcctaaaaaCTTATAGTTCCAtcctttgcctttataactggCTTCAAGCTCTTTGTTATCCtcttttaattattgtaattaaaaagTCTGGAAAATGCAGAAGAAATTTACACCCAACTGTAgcaatataattaaatatctaTCATTATATATCCATAGCTGTTTAGCCTGTAAAGCATAATCTAATGCCATAATCatgaaaaatacttttttttttttagaaactctAATGActattttaaaccttttcttCAAGTCAATAATTACAATGGCAATCATTTTATCTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385304 False 613 lncRNA 0.34 2 2055183 2140101
XR_003403348.2 True 1187 lncRNA 0.39 4 2139987 2142077

Neighbor

gene id symbol gene type direction distance location
LOC113532949 apoa2 coding downstream 43386 2010189 ~ 2011797 (-)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 78231 1952830 ~ 1976952 (-)
rgl2 LOC108256293,LOC108433895 coding downstream 291777 1735617 ~ 1763406 (-)
si:dkey-33i11.1 fcgr2a coding downstream 336590 1714275 ~ 1718593 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 346937 1686703 ~ 1708246 (-)
tmem176l.1 NA coding upstream 125933 2268010 ~ 2272046 (-)
si:dkey-152b24.7 LOC108256182 coding upstream 193396 2335473 ~ 2339983 (-)
mex3a mex3a,mex3b,LOC107688221 coding upstream 235401 2377478 ~ 2384403 (-)
LOC113532929 NA coding upstream 263593 2405670 ~ 2409342 (-)
zmp:0000000881 NA coding upstream 269724 2411801 ~ 2416406 (-)
G325090 NA non-coding downstream 34778 2020180 ~ 2020405 (-)
G325056 NA non-coding downstream 106972 1906943 ~ 1948211 (-)
G325058 NA non-coding downstream 134711 1919271 ~ 1920472 (-)
G325003 NA non-coding downstream 157002 1897711 ~ 1898181 (-)
G324980 NA non-coding downstream 307175 1747657 ~ 1748008 (-)
LOC113533076 NA non-coding upstream 73393 2215470 ~ 2238076 (-)
G325311 LOC108256179,LOC108433877,LOC108433850 non-coding upstream 110071 2252148 ~ 2255378 (-)
G325351 LOC108256181 non-coding upstream 173055 2315132 ~ 2333757 (-)
G325356 NA non-coding upstream 192375 2334452 ~ 2334651 (-)
G325343 NA non-coding upstream 206228 2348305 ~ 2372802 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 486677 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 604183 1403264 ~ 1451000 (-)
G324748 NA other downstream 684154 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 713112 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 953066 1043313 ~ 1102117 (-)
LOC113532533 LOC108256344 other upstream 1087944 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1177467 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1578612 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 1815420 3957497 ~ 3966115 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 2166529 4308606 ~ 4347253 (-)

Expression


Co-expression Network