G325247


Basic Information

Item Value
gene id G325247
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2334879 ~ 2335106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU385460
CACTTTCATGCATCCCTTCATGCATTCATTATGTAATACTCTTCCACTTAACCTGACCTATGCTGTCCCAAAccttttatgcaaattataaaCATCTGAATATGATATAAACTAACACtatgcttattttgttacagtagtaTGCGTCATGGGATTCTGTGTGAAAGTGTGGGAGAAAAGTTGGGGTGTCTGCGGTCCAAgagaatttttctttttactactATTTTC

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU385460 True 228 lncRNA 0.36 1 2334879 2335106

Neighbor

gene id symbol gene type direction distance location
LOC113532585 LOC108256181 coding upstream 1155 2329248 ~ 2333724 (+)
LOC113532738 LOC108256190,LOC108256173 coding upstream 10813 2318318 ~ 2324066 (+)
LOC113532733 LOC108256181 coding upstream 18369 2313664 ~ 2316510 (+)
LOC113532735 LOC108256190,LOC108256173 coding upstream 22509 2310045 ~ 2312370 (+)
LOC113532734 NA coding upstream 37889 2295318 ~ 2296990 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding downstream 4347 2339453 ~ 2349519 (+)
lamtor2 lamtor2 coding downstream 18998 2354104 ~ 2356216 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding downstream 23209 2358315 ~ 2362999 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding downstream 29647 2364753 ~ 2372440 (+)
LOC113533066 thsd7a,LOC108256167 coding downstream 91638 2426744 ~ 2537060 (+)
G325089 NA non-coding upstream 314491 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 322898 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 333875 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 402553 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 595624 1735619 ~ 1739255 (+)
G325268 NA non-coding downstream 61567 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 65364 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 308935 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 736743 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 804206 3139312 ~ 3208962 (+)
LOC113533074 LOC108256184 other upstream 119469 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 190354 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 415169 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1171265 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1324656 956584 ~ 1010223 (+)
G325435 NA other downstream 230594 2565700 ~ 2569739 (+)
hamp NA other downstream 1676274 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2056414 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2063553 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2585874 4920980 ~ 4923681 (+)

Expression


Co-expression Network