G325271


Basic Information

Item Value
gene id G325271
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2400470 ~ 2400684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU385486
ggacactcgagttcttccactccaaccttcacacaccatgtcttcacggagtttgctttgtgcacagggacattgtcatgctggaacaggtttgggcctcttagttccagtgaagggaaactgtaatgctacagcacacaaatacattctatacaactgtgtgcttccaactttgcggtgacagtttgaggaagaactacatatgggtgtgacgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385486 True 215 lncRNA 0.47 1 2400470 2400684

Neighbor

gene id symbol gene type direction distance location
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding upstream 28030 2364753 ~ 2372440 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding upstream 37471 2358315 ~ 2362999 (+)
lamtor2 lamtor2 coding upstream 44254 2354104 ~ 2356216 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding upstream 50951 2339453 ~ 2349519 (+)
LOC113532585 LOC108256181 coding upstream 66746 2329248 ~ 2333724 (+)
LOC113533066 thsd7a,LOC108256167 coding downstream 26060 2426744 ~ 2537060 (+)
LOC113532859 LOC108256203 coding downstream 142258 2542942 ~ 2549897 (+)
ica1 ica1,LOC107592479 coding downstream 153436 2554120 ~ 2563081 (+)
col28a1b LOC108256731 coding downstream 182535 2583219 ~ 2607036 (+)
slc25a32b slc25a32,LOC107688281,LOC107756894,LOC107726671 coding downstream 246097 2646781 ~ 2656914 (+)
G325268 NA non-coding upstream 3583 2396673 ~ 2396887 (+)
G325247 NA non-coding upstream 65364 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 380082 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 388489 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 399466 2000137 ~ 2001004 (+)
G325462 NA non-coding downstream 243357 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 671165 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 738628 3139312 ~ 3208962 (+)
G325754 LOC108256342 non-coding downstream 858245 3258929 ~ 3260181 (+)
G325815 NA non-coding downstream 919233 3319917 ~ 3322330 (+)
LOC113533074 LOC108256184 other upstream 185060 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 255945 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 480760 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1236856 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1390247 956584 ~ 1010223 (+)
G325435 NA other downstream 165016 2565700 ~ 2569739 (+)
hamp NA other downstream 1610696 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 1990836 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 1997975 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2520296 4920980 ~ 4923681 (+)

Expression


Co-expression Network