LOC113533076


Basic Information

Item Value
gene id LOC113533076
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2215470 ~ 2238076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU385540
GAGAACCAATATCGGAAAACTGAATCGAATGGATTGCAGCTGGTGCACGTTTTCAATTATCCTTAAAAACAGGTCAAATTTAAGGGCCCCTGCAAAGAGACACACCTTAAAATATCCTTAAACTCAAGTGCAAGGACGGTGTGAATGTAAGGATAGATGTCAGTACCTGAAAATGATGAAGATTCACAAATCCTTCAGGAGGAGCCTCTGGAGAAACGTTCCAAATTCACCAAATGTCCCTCAAGTTTGTCAGATTTAGTCGTGTGATGATGTTAAAGCATCGGCTGAGGAATGATGCAtctggaaagagagagagagagagagagagagagagagggagagaaagagagagagagagagggagagtcgTGCGCGCTGAGCCATGAGCCATTTTTGGGAAGCTCTTCGTGACAGTCGGCTGAGTCGTGATCTTTGGAGAGGAGAAAATTTACGCATGGTGCGCAACATTGATCCGATCCACCGGCCACATTTCCATTGACAGTATTTCCTCCATCACAAAAGGGCATAGCCTGGTTGCTAATATTAGCACTTCCACTGGCCAGAAGCCCTATGACCaagaaaaaacaactgaaaaactACTTCAAGAAGCCATAACAACACAATGAAAGGactttctgtctgtatttaaCAATGGAGAACAAGAGAAGAACAAGCAACCATACTGACCTGGAGAAATGCCTTTCCTGGAAGGAGCACCGCTTCAGGTTTTGATGTGTCAAAAGAAAGAGACATGGAGTGATGCTGATGCCAGCTTTGAGGTAGATTCACATAAAATGATCTCCTAGGATTTCAGGCTATATAGCTCACATAGTTATTAATATAACtaagaaaaaaagactaagCTGATATATACAGATAGATTTATTGgatgttaattaatattacgTAGATCAGAGGTGTCCAATCTTaaccacaaagggccagtgtgggtgcattTTTTCATCCATGCAGGAGctacacctgattccacctgtttaaccAGTTGACCTTgactttcagtagactcaggtgtggcttctgcttgattggcatgaaaacctgcacccacaccggccctttctgGATAGGATAAGATGAGTTAGATTAAAAAGTGTCCCTTACATGAATATTCTTCAGCTACTTTTAACTTAAATTTACCTTAATGCATGAATCTGTGTTACTTTTCTTGGCTGTTTcctttttatcatttcttaATATATTAGAGGTAAAATGTGTAATTCATGTTCAAAATCCAATctgtaaacattaaacaaaatgtcCTGTTAGTGTCTGTTCAATAAAAGC
>XR_003403392.2
gagagagagagagagagagagagggagagaaagagagagagagagagggagagtcgTGCGCGCTGAGCCATGAGCCATTTTTGGGAAGCTCTTCGTGACAGTCGGCTGAGTCGTGATCTTTGGAGAGGAGAAAATTTACGCATGGTGCGCAACATTGATCCGATCCACCGGCCACATTTCCATTGACAGTATTTCCTCCATCACAAAAGGGCATAGCCTGGTTGCTAATATTAGCACTTCCACTGGCCAGAAGCCCTATGACCaagaaaaaacaactgaaaaactACTTCAAGAAGCCATAACAACACAATGAAAGGactttctgtctgtatttaaCAATGGAGAACAAGAGAAGAACAAGCAACCATACTGACCTGGAGAAATGCCTTTCCTGGAAGGAGCACCGCTTCAGGTTTTGATGTGTCAAAAGAAAGAGACATGGAGTGATGCTGATGCCAGCTTTGAGGTAGATTCACATAAAATGATCTCCTAGGATTTCAGGCTATATAGCTCACATAGTTATTAATATAACtaagaaaaaaagactaagCTGATATATACAGATAGATTTATTGgatgttaattaatattacgTAGATCAGAGGTGTCCAATCTTaaccacaaagggccagtgtgggtgcattTTTTCATCCATGCAGGAGctacacctgattccacctgtttaaccAGTTGACCTTgactttcagtagactcaggtgtggcttctgcttgattggcatgaaaacctgcacccacaccggccctttctgGATAGGATAAGATGAGTTAGATTAAAAAGTGTCCCTTACATGAATATTCTTCAGCTACTTTTAACTTAAATTTACCTTAATGCATGAATCTGTGTTACTTTTCTTGGCTGTTTcctttttatcatttcttaATATATTAGAGGTAAAATGTGTAATTCATGTTCAAAATCCAATctgtaaacattaaacaaaatgtcCTGTTAGTGTCTGTTCAATAAAAGCACTAAACTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU385540 True 1305 lncRNA 0.40 5 2215483 2238076
XR_003403392.2 False 1005 lncRNA 0.40 5 2215470 2237763

Neighbor

gene id symbol gene type direction distance location
LOC113532949 apoa2 coding downstream 203673 2010189 ~ 2011797 (-)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146 coding downstream 238518 1952830 ~ 1976952 (-)
rgl2 LOC108256293,LOC108433895 coding downstream 452064 1735617 ~ 1763406 (-)
si:dkey-33i11.1 fcgr2a coding downstream 496877 1714275 ~ 1718593 (-)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 507224 1686703 ~ 1708246 (-)
tmem176l.1 NA coding upstream 29934 2268010 ~ 2272046 (-)
si:dkey-152b24.7 LOC108256182 coding upstream 97397 2335473 ~ 2339983 (-)
mex3a mex3a,mex3b,LOC107688221 coding upstream 139402 2377478 ~ 2384403 (-)
LOC113532929 NA coding upstream 167594 2405670 ~ 2409342 (-)
zmp:0000000881 NA coding upstream 173725 2411801 ~ 2416406 (-)
LOC113532493 NA non-coding downstream 73393 2055183 ~ 2142077 (-)
G325090 NA non-coding downstream 195065 2020180 ~ 2020405 (-)
G325056 NA non-coding downstream 267259 1906943 ~ 1948211 (-)
G325058 NA non-coding downstream 294998 1919271 ~ 1920472 (-)
G325003 NA non-coding downstream 317289 1897711 ~ 1898181 (-)
G325311 LOC108256179,LOC108433877,LOC108433850 non-coding upstream 14072 2252148 ~ 2255378 (-)
G325351 LOC108256181 non-coding upstream 77056 2315132 ~ 2333757 (-)
G325356 NA non-coding upstream 96376 2334452 ~ 2334651 (-)
G325343 NA non-coding upstream 110229 2348305 ~ 2372802 (-)
G325366 NA non-coding upstream 149233 2387309 ~ 2387558 (-)
G325145 mtmr11 other downstream 118035 2088259 ~ 2097435 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 646964 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 764470 1403264 ~ 1451000 (-)
G324748 NA other downstream 844441 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 873399 1294865 ~ 1342071 (-)
LOC113532533 LOC108256344 other upstream 991945 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1081468 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1482613 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 1719421 3957497 ~ 3966115 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 2070530 4308606 ~ 4347253 (-)

Expression


Co-expression Network