G325730


Basic Information

Item Value
gene id G325730
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3139312 ~ 3208962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU386009
AATTAAATTCATTCCTAAATTAAATTCACTCATAAATTCacttataaattaaatatattaaattcagcctttttttttttcaaataaataatctccaaccattttttttttaaacaaatcgaCAGTTGGAAGAGGGAATAGTTCGCAGCAAGACGCACAGCCGAAAACAGACCTATAaactgagctgttactgtagagaaagacacgcccacagtgggcGGGGGGTGGGACGTATAgattctagagagcatttaattggacgaacacaagactagtacaggatgagtcataaaaaaaaatgtaattgttgtcCAGGAAGTgatgaactataaaattaaaataagaatatctccaaattaataataataataataataataataataataataataataataataataaacaccccCGCTTTGAGGACAGCAATTTTAACTCACATGCTAATGGGTAAGATTTGATACGTGTctatctgaatttaaaaaaaaatgtttatattctcCTCCCAATTAATGTTTGCAAATCATAATCAAggtaaaatatttacaacaaCCGTTCATCACAGGCCTGTAATTTAAGCCACACTTTAGATGCATGAAAGGCGCCAAATCAAACTATTCCAAGCCCGAGACGTCTCATTTATTTAAGCTATTTTGCTTCAGACCGATGTGAGTCAGTTACTATTTCTGTCATTATTTCCTCCACTCCACTCCCTCATCAAGGGCCCTCCAGCAGCCGAAGCGCCTTGTGCTTCCTACCCATAATCACCCACTAAGGCAGGGGTGGAGAGAGCATTGATCTGTAAGCAGTCTGTTATCTTTTCGAGTATCACCGTCTCATTAAATCCTCCGTGATGTCTCGGCGTGTGATTACAGCGGCTGTCGGGGCGAAAGTGGCCAAATCTGCTATTAGACGAGTGAAACAGCTGCCTGCGAAATCACGTCTTACGTTACGACCCGAGACGGCTCCAGGCGGCCGTTAGCATAATTACACACTCAGGTaaaccaacacacactgctgagcaAGAAAGAGAACGCTTCAGATTCATTCAGAAGATGATTTTACCCAAAACGGCTgcttttacatattattttattgtcttgCATCACTTAGTCTGTTGGTTCATCTTTAATTTCAGCCCTCTAATGATTTTAGCAAGTTTACTTTcacatttctttttcctctgaTTTCTCTCAGGGTTTTAAACTCAGAACCTTTGCTTCGCTCAGAGGATTGTGGGAAAATGCAGGAAGGCATCCAAACGTAACGCTCTACAATTCACTCATTTGGAAGCATTTTCCAAAAGTGATGCCTGCAGAATCAAAATTCAGAAAACGTTCCAAGTTCATTAGCAGCCATTGCCTAAAGGGAGCAGTTATACAAATGCGGCTGTGCTGCGTAGCGCTAATTATGCAGGTGCTAAACCTTTACCATAATTACCTTTCGCTTCAGGTCTAAGGATAAGCGTTTATCTTTCACAATACGTGACCATTATGACCACACACAACATGTACAGGTATTTGCTGAGAAAACGCTTGCTCCCATTCAGTGAATGTAATAATGCCACccaatatttctgagattttaTGCTTCATCatcgacaaaaaaaaaaaataaagtaaaacaattCATACAACCAACCAACTGGCTATTAGCGTAACAATGGGGTTGGTGAGATATAGAAAACTTTCAAAAAACATGCTGCAATATTGTTAACAGAAGTGACATGAATTTAGACTTGGTATTGGATGTTGTTCTTGTGTTTTGACTAGCATACAGTCAGctccacaattattggcacccttgatataaaaaaaagatatgaaaaaataacTTTATGCTTAACCTTTTCATTGTAGTAAATTAATTCaaaggatatttttttttaaacagaaccATGTGTGTCAATTATTGGCACCGCTAGAAATCCTTAGGAAAACCATGTACCTGAAGCAtcccatttatattttacatcttTTAAATTTCATCTTTGGCCAAATTATCCAATTCtgtctgtaatttaaaaaatctaaacaaaaaatgtacataataaatatataaaatcaaatgaaaatataatttaaaaatctatataaaaatatatgtattattaaagtacataaaatatataagttTTATTAATCCTACCCCTACATCCTACATCGTATCATAAATACTGGTTGTTCACTCAACTGTGTAACTCGTCCACCAATTTAGCAGCTAATTTAACGAGTCTTGTTAAAAGAGAAACTAATTGTAGCTCCCGAGTGGTGCAACCCTATTGTCTGGGATCGTGAGTTTAGATTatgacgatgccacagccgtcCGTGGCCAGAAGACCGAGAGCTCTAGCACTTCTCTAGCACAGGTAAAGGGCATACACTATGGTCACATGATCTACTAATGATTAAGACCTACAGcagtttgcattaaaatgaGACGTACGTAGTATACATGGAACCTTTAGCATGACGACCATGTGTACATCGTGAAGACCATGccaataatattaaacattaaacaactATTATCCCACCTGAATCATAGAAAAACTCAAGAACACTATCTATCTACGTGTCTTGTTAGAACAGATTTATAGCTGTTGCAAATTGCCTGATGTCTTCCTATTAAACATGATTTAGTTATAAATTCTGGGATCTGAGACACTGTTACAGACTCCATCAGAGTCATGAGCGTGTTTGAATTTTCCCAGCACCATCTCATTTCATGTTTCATAGTCACTTACTTAATTTTCCAAAATAGTCCTGCCTTTGGGGGATGCACTATGAGAAATGATGGAGAAGATCTGAGGCATCCATGAATAAGACATGAAATTTTCAAGTAAAGGAGGGGGGGGAAAACATGACTCAAATACAGCCATCAATTATTCACCAGAGTAGCCATCAGCATGAGGGTTCACATGAACGCTTGCGTACGACGTCTTCGCCGTGCGTCCGTGTAGGGGGCGGGGGGGATGGCCTATGGCTAGTAAGGAAATGAGAAGAGAATAAGCTGCCGCCTGCACTAAAAAAATGTGCCATGCATTTTTTATTGTCAAGGGACAATTACGCAAAATCCTGTCATGGCAAAAATCATTCACTCGGTTCTTGAATGCTGACTGGATGCACTGTATTAATGTTTCAGAGCGTCAGCATGAGCCAGATTTGCCTCTGGTTGGTGCGTTCAGTTCAAAACCCAAGGTCAGGACGGTAACCTTTGTAAAAATCTCATTAGCAAGAAAACTGATTAGCAACAAGAATCATCTACAGTCCCTAGAAACAAAAACGGTTAAATCagttaaacaaaaacagttaCATCTAGGACCCCTTATGCATTTGTTCCTTTGCGGGAACCATTAAAATTTTCTAACAGTGGGTTTGTGGAGAAATTTAAACCCTCAGGGGTCTTTTGGTTGTCCCTCAAGACCCAATGCCTCAGGGTGCAGATAAAGTAGAAACCTTTCATGAGGAATCTTTGTACAACCCTTACTTCTAAGATCCTAtgcccttaagggttctttgcttGTCCCTCTGGAGGATAGGCTTATATGTAGAATCCCTACCAGATAGGGTTcccaataaaacatttttaagagTCTAGAAAACTAGGATTCATCAAAGAACTAGCATACATGATAGTCATTTCTTTCCAAATGTACTGCTAGAACATTTAACCACCAAGGAACCCTTGTCAAACCCTTGTTTCCAGGAGTGAATGCCTAGGCTTCAAAAATTTAAACCCTTAAAGGCTTTTTGGTTATCCCTCTAGATGACAAGATTCTACGTAGAACCTACAAAAGTGGGTTTCGGGGAATACTAGACCTCTACCCAGCCAAAGAACTCCTTTTGTTCTAACAGCGTAGGTGGTGTTTTTACCTGAACTGCAGCAATTTTCTAGAATCTCCTAACAAGACCTCTCGAGAgacattcattttcaatttatGCTAGAACCTTTTAACCATCTGAGGGACTCTTGCCAAAACACTGTTTCCAAAAATTCATGCttatttttagaagaaaaaaatttaacccTTTAGacttctttggttgtccctctggaggGCAAATTTCTATGAAGAATCATGAACATtctttaattatccaatgaaacCTTAAAAACCTAATTTATGTAGACTTCGTTAATTACTAGTCAGCacgctagctagctactaaTTAGGCTAAATCAGCTTAaagtgacaaattaaattagtctgaaatgaaatgtttaggATTTATTAATGTTACTTTTTAGAAAAAGAGACAAGAAATGCTTTTATTCAGGACACAACCTTATTTTCCCTCAAGATCTGAAACGTTAATGAGCCACATTAGAGTTCTTACCACACTGCCATGATTGAGATGCAATGAATTTCAGCGTGAAAGACGTTGAAACATCTCGGCAGACTAATGTGTTGCTGAATGACTAATTCAGACTAATTATAATACACACAGCATGTGTGCATGAAGCCACATGGCGGCAGGGGAgggaaaaaatcatttaaaagctTTCTCAGAAAAGCACAAGCACATGGAAGAGCTTAGTCACTGAAAGACTCGACGTGCTGTTGCGAACATTTCAAAAGTCACTCAGAGGTTAAAGTTAAAACCTGACACTAGGAGACGACCAAAACAAGAACATTTCACCAGCACCACAAAACTCCAAATTTTGTAAATCTAACCGgaatacattatacacacctGTCCTTATCCACAATAATGAACAACTACAAGCCGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386009 True 4739 lncRNA 0.38 2 3139312 3208962

Neighbor

gene id symbol gene type direction distance location
slc25a32b slc25a32,LOC107688281,LOC107756894,LOC107726671 coding upstream 482398 2646781 ~ 2656914 (+)
col28a1b LOC108256731 coding upstream 532276 2583219 ~ 2607036 (+)
ica1 ica1,LOC107592479 coding upstream 576231 2554120 ~ 2563081 (+)
LOC113532859 LOC108256203 coding upstream 589415 2542942 ~ 2549897 (+)
LOC113533066 thsd7a,LOC108256167 coding upstream 602252 2426744 ~ 2537060 (+)
pbx2 LOC108256343,LOC108439298,LOC103040777,LOC107711540 coding downstream 31480 3240442 ~ 3251360 (+)
tap1 tap1 coding downstream 56321 3265283 ~ 3278447 (+)
brd2b LOC108256339,LOC103041900,LOC107592490 coding downstream 71035 3279997 ~ 3295032 (+)
LOC113532608 NA coding downstream 92593 3301555 ~ 3304044 (+)
LOC113532606 LOC108256085 coding downstream 96144 3305106 ~ 3310818 (+)
G325697 NA non-coding upstream 67239 3071849 ~ 3072073 (+)
G325462 NA non-coding upstream 491729 2644041 ~ 2647583 (+)
G325271 NA non-coding upstream 738628 2400470 ~ 2400684 (+)
G325268 NA non-coding upstream 742425 2396673 ~ 2396887 (+)
G325247 NA non-coding upstream 804206 2334879 ~ 2335106 (+)
G325754 LOC108256342 non-coding downstream 49967 3258929 ~ 3260181 (+)
G325815 NA non-coding downstream 110955 3319917 ~ 3322330 (+)
G326023 NA non-coding downstream 492372 3701334 ~ 3702153 (+)
G326131 NA non-coding downstream 671715 3880677 ~ 3880941 (+)
G326178 NA non-coding downstream 736420 3945382 ~ 3946133 (+)
G325435 NA other upstream 569573 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 923902 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 994787 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 1219602 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1975698 1118268 ~ 1163614 (+)
hamp NA other downstream 802418 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 1182558 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 1189697 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 1712018 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 1715819 4924781 ~ 4930155 (+)

Expression


Co-expression Network