G325774 (LOC108256343,LOC108245987,LOC103040777,LOC108439298)


Basic Information

Item Value
gene id G325774
gene name LOC108256343,LOC108245987,LOC103040777,LOC108439298
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3175760 ~ 3240764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU386067
CTGGGCTTCGTCTAGACTTTGGTCAGTGATGGTCATGATTTGTTGCAAAATGTCCCCAATGTCTCGTCTGTTTTCATGACCGTTTTCTGTTCCCTCGAGGCCCGCGTCGCCATCGGGCCGGTGTTGTGGCGGAGGGTGCACCGAGTTCAGGGTGTGCATTCCCGGGTGAGTGTTCAACGCGAGCCCCCGGCCTGAGTTGGGCCCGTTGCCTGTAATAGGCTGCTGCTGCAACATACCGAGCGTCACATTAATCTAAACCgagccagctgttgtgtgtgtgtgtgtgtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386067 True 289 lncRNA 0.56 2 3175760 3240764

Neighbor

gene id symbol gene type direction distance location
rad21a LOC108256659,LOC108412369,LOC107711537,LOC107671466,LOC107726662,LOC107592120 coding downstream 25009 3141067 ~ 3150751 (-)
eif3ha eif3h coding downstream 35661 3111442 ~ 3140099 (-)
LOC117595760 NA coding downstream 129873 3036394 ~ 3045887 (-)
csmd3a LOC108256161,LOC107688260,LOC107671459,LOC105891721 coding downstream 256866 2680337 ~ 2918894 (-)
cthrc1b cthrc1b,LOC108256451,LOC107726655,LOC107592186,LOC107688280,LOC105891862 coding downstream 507551 2656902 ~ 2668209 (-)
notchl LOC108256342 coding upstream 11929 3252693 ~ 3262914 (-)
LOC113532763 satb1 coding upstream 375831 3616595 ~ 3672133 (-)
efhb efhb coding upstream 460570 3701334 ~ 3712518 (-)
nek10 nek10 coding upstream 652123 3892887 ~ 3915968 (-)
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding upstream 704786 3945550 ~ 3950960 (-)
G325616 NA non-coding downstream 577181 2597279 ~ 2598579 (-)
G325373 NA non-coding downstream 775170 2400317 ~ 2400590 (-)
G325366 NA non-coding downstream 788202 2387309 ~ 2387558 (-)
G325343 NA non-coding downstream 802958 2348305 ~ 2372802 (-)
G325356 NA non-coding downstream 841109 2334452 ~ 2334651 (-)
G326133 NA non-coding upstream 581141 3821905 ~ 3878517 (-)
LOC113532993 NA non-coding upstream 633159 3873923 ~ 3881884 (-)
G326235 NA non-coding upstream 758345 3999109 ~ 4001515 (-)
G326236 NA non-coding upstream 760854 4001618 ~ 4001825 (-)
G326488 NA non-coding upstream 821152 4061916 ~ 4076968 (-)
G325145 mtmr11 other downstream 1078325 2088259 ~ 2097435 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 1607254 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 1724760 1403264 ~ 1451000 (-)
G324748 NA other downstream 1804731 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 1833689 1294865 ~ 1342071 (-)
LOC113532799 rftn1 other upstream 78780 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 479925 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 716733 3957497 ~ 3966115 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 1067842 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 1691391 4932155 ~ 4977527 (-)

Expression


Co-expression Network