vsig10l (vsig10l)


Basic Information

Item Value
gene id vsig10l
gene name vsig10l
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3957497 ~ 3966115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU386553
gTCTTTAACTCCTCGAATGAAGCAGCAGAACGAAATCCCAGATATCCTGTCGCAAGAGCCACGAAGAAAGCTGTTATCAGTCAGCCTGATCTGACCAAACCTCACCACCTGCTGACCAGAGGCCTTAAACAGCCTCCAGCCTACAATCACCACCGTCACCAGGCTCCGAGTGAACGTTCAAGCTCACTGCCGTTAGCGATTCCCCCTGTCAGAATGGCCACTACTGTGTAATACACCCTTGACTCGATGACCAATAATATTTCTTTGTGTCCTAAAGACATTTGATAAGAGGCCTGGCATTGTTCAGATCTACCTCACACGCTATCCATCAACAGCCAAAGCTTTAATAATTTCCTACtttattaattgtaatttagaGAAATTACCTTAAATGTAGGAACAAATAACTGTTCAACATTTCAACACGCTGACcattaacacaaaaaacacactccTAACATTCATTTGCGGCTCTGAAACTTTCTCCTTTTAAGCCACAGACCGTGAATGACCcgataaacacacaaaaaaatatttaatatgcac
>XM_026924685.2
GGCTCACTGATCTGTCCTTGCCTGCTGAAAATCCTGAGTATTTTGACCTGGCGGGTTTTAGTTAGACGTCGTTTCTCTTGGAGTTTTATCGTCATAAAGTAGCTTAAAATCATTACTTTGGTGTATTTTTTATCCTGAACCCTGCTGTTGTTCTTTCTTTAGTTTAACACAAACTTTTCAGCATCAATGTCTCATTGTCTAGTGGCCAGTCTTGCACTTCTGCTTGTGTGCAGCTTAACAGGCACCGATTGTCTTCTAGTCATCTGGCCCAGTGGATCTACGTTGGTTAATGCTTTTGTGGGCACCAACTTGACACTTGGCATTTCATATAGAGGAGTCACCGAGCCTCTAGTAACGTGGCTGAATGGGACCCTGATTCTGGCGACATGGACCATAGGCCTCAACACTCCTCCTCCTGACATCGCCCCAGCATACAGCAGTGTCTTATCCATGGATCAGACCGGATCTCTGGTCTTCCAGAACGTTCCATCCAGCTACAGTGGCACATACACGGCGCAAATGGTGAAGCCAGGGGCTCATGAGGCCTCAGTCAACTTTACACTATTGGTGTACAACATCATCACAGATGTTTCTGTGGTCGCAGTCTCACAGGACTTTGTAGAGGGAGGAGCGCCATTCACTCTCTCTTACAGCTCGATGCAAGGACCGGTCATGACTTCAGCGTGGTACTTTAAAGGCTTGGAGGTGGTGAACAGCTCTCGGTACCTGATAACTCAGAAGAGTCTGACCATAAATCAGCCAAACCGCAATGACACAGGGCTCTACAGTGTGGTGCTCTCAAATCCATTCAGTAATGTGACACAGAGCAAGAACATCACAGTGCTATATGGACCAGAACAACCGGTTTTGGAGGTCAGTCCCACAAAAGCAACCTTTGTTTCCGGAGagactgtctctctgtcatgcCGAGCTGAAGGTGAACCGCCTCCCTCGGCCTCATGGGTGTTTAATGGACAGTCGCTGCCAACCTCCAATGGCACACTGCAACTCACCCATGTTCAGACGAGCCAGAGCGGTGTATACAAGTGTGTTCTGGTTAACAGCAGGACCAACATGCGCCTTACGAGGAATGTCACCATAAACATCCAGGGCCTTAGCAGTTCAGCCATTGCTGGTATAGCTGCTGGAGTCCCGTGCTTTATCCTCCTGCTGCTACTCTTCGCAGGCCTCATCCTCCTCTGTTACTACTGCTATAAAAAGAAAGCAGCAGAACGAAATCCCAGATATCCTGTCGCAAGAGCCACGAAGAAAGCTGTTATCAGTCAGCCTGATCTGACCAAACCTCACCACCTGCTGACCAGAGGCCTTAAACAGCCTCCAGCCTACAATCACCACCGTCACCAGGCTCCGAGTGAACGTTCAAGCTCACTGCCGTTAGCGATTCCCCCTGTCAGAATGGCCACTACTGTGTAATACACCCTTGACTCGATGACCAATAATATTTCTTTGTGTCCTAAAGACATTTGATAAGAGGCCTGGCATTGTTCAGATCTACCTCACACGCTATCCATCAACAGCCAAAGCTTTAATAATTTCCTACtttattaattgtaatttagaGAAATTACCTTAAATGTAGGAACAAATAACTGTTCAACATTTCAACACGCTGACcattaacacaaaaaacacactccTAACATTCATTTGCGGCTCTGAAACTTTCTCCTTTTAAGCCACAGACCGTGAATGACCcgataaacacacaaaaaaatatttaatatgcacTTTTAC
>XM_026924686.2
GGCTCACTGATCTGTCCTTGCCTGCTGAAAATCCTGAGTATTTTGACCTGGCGGGTTTTAGTTAGACGTCGTTTCTCTTGGAGTTTTATCGTCATAAAGTAGCTTAAAATCATTACTTTGGTGTATTTTTTATCCTGAACCCTGCTGTTGTTCTTTCTTTAGTTTAACACAAACTTTTCAGCATCAATGTCTCATTGTCTAGTGGCCAGTCTTGCACTTCTGCTTGTGTGCAGCTTAACAGGCACCGATTGTCTTCTAGTCATCTGGCCCAGTGGATCTACGTTGGTTAATGCTTTTGTGGGCACCAACTTGACACTTGGCATTTCATATAGAGGAGTCACCGAGCCTCTAGTAACGTGGCTGAATGGGACCCTGATTCTGGCGACATGGACCATAGGCCTCAACACTCCTCCTCCTGACATCGCCCCAGCATACAGCAGTGTCTTATCCATGGATCAGACCGGATCTCTGGTCTTCCAGAACGTTCCATCCAGCTACAGTGGCACATACACGGCGCAAATGGTGAAGCCAGGGGCTCATGAGGCCTCAGTCAACTTTACACTATTGGTGTACAACATCATCACAGATGTTTCTGTGGTCGCAGTCTCACAGGACTTTGTAGAGGGAGGAGCGCCATTCACTCTCTCTTACAGCTCGATGCAAGGACCGGTCATGACTTCAGCGTGGTACTTTAAAGGCTTGGAGGTGGTGAACAGCTCTCGGTACCTGATAACTCAGAAGAGTCTGACCATAAATCAGCCAAACCGCAATGACACAGGGCTCTACAGTGTGGTGCTCTCAAATCCATTCAGTAATGTGACACAGAGCAAGAACATCACAGTGCTATATGGACCAGAACAACCGGTTTTGGAGGTCAGTCCCACAAAAGCAACCTTTGTTTCCGGAGagactgtctctctgtcatgcCGAGCTGAAGGTGAACCGCCTCCCTCGGCCTCATGGGTGTTTAATGGACAGTCGCTGCCAACCTCCAATGGCACACTGCAACTCACCCATGTTCAGACGAGCCAGAGCGGTGTATACAAGTGTGTTCTGGTTAACAGCAGGACCAACATGCGCCTTACGAGGAATGTCACCATAAACATCCAGGGCCTTAGCAGTTCAGCCATTGCTGGTATAGCTGCTGGAGTCCCGTGCTTTATCCTCCTGCTGCTACTCTTCGCAGGCCTCATCCTCCTCTGTTACTACTGCTATAAAAAGAAAGCAGAACGAAATCCCAGATATCCTGTCGCAAGAGCCACGAAGAAAGCTGTTATCAGTCAGCCTGATCTGACCAAACCTCACCACCTGCTGACCAGAGGCCTTAAACAGCCTCCAGCCTACAATCACCACCGTCACCAGGCTCCGAGTGAACGTTCAAGCTCACTGCCGTTAGCGATTCCCCCTGTCAGAATGGCCACTACTGTGTAATACACCCTTGACTCGATGACCAATAATATTTCTTTGTGTCCTAAAGACATTTGATAAGAGGCCTGGCATTGTTCAGATCTACCTCACACGCTATCCATCAACAGCCAAAGCTTTAATAATTTCCTACtttattaattgtaatttagaGAAATTACCTTAAATGTAGGAACAAATAACTGTTCAACATTTCAACACGCTGACcattaacacaaaaaacacactccTAACATTCATTTGCGGCTCTGAAACTTTCTCCTTTTAAGCCACAGACCGTGAATGACCcgataaacacacaaaaaaatatttaatatgcacTTTTAC

Function

symbol description
vsig10l Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG10L (V-set and immunoglobulin domain containing 10 like).

NR:

description
V-set and immunoglobulin domain-containing protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386553 False 546 lncRNA 0.42 3 3957503 3958995
XM_026924685.2 True 1755 mRNA 0.47 8 3957497 3966115
XM_026924686.2 False 1752 mRNA 0.47 8 3957497 3966115

Neighbor

gene id symbol gene type direction distance location
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding downstream 6537 3945550 ~ 3950960 (-)
nek10 nek10 coding downstream 41529 3892887 ~ 3915968 (-)
efhb efhb coding downstream 244979 3701334 ~ 3712518 (-)
LOC113532763 satb1 coding downstream 285364 3616595 ~ 3672133 (-)
notchl LOC108256342 coding downstream 694583 3252693 ~ 3262914 (-)
etfb etfb,LOC107552519 coding upstream 2733 3968848 ~ 3978679 (-)
LOC113532945 LOC108256150,LOC108442742 coding upstream 251453 4217568 ~ 4222172 (-)
LOC113532947 NA coding upstream 259845 4225960 ~ 4233987 (-)
LOC113532948 NA coding upstream 276239 4242354 ~ 4244860 (-)
LOC113532587 LOC108256689 coding upstream 284827 4250942 ~ 4256972 (-)
LOC113532993 NA non-coding downstream 75613 3873923 ~ 3881884 (-)
G326133 NA non-coding downstream 78980 3821905 ~ 3878517 (-)
G325774 LOC108256343,LOC108245987,LOC103040777,LOC108439298 non-coding downstream 716733 3175760 ~ 3240764 (-)
G325780 NA non-coding downstream 720169 3209206 ~ 3237328 (-)
G325778 NA non-coding downstream 743046 3194843 ~ 3214451 (-)
G326235 NA non-coding upstream 32994 3999109 ~ 4001515 (-)
G326236 NA non-coding upstream 35503 4001618 ~ 4001825 (-)
G326488 NA non-coding upstream 95801 4061916 ~ 4076968 (-)
G326557 NA non-coding upstream 226835 4192950 ~ 4194247 (-)
G326597 NA non-coding upstream 418960 4385075 ~ 4394774 (-)
znf385d znf385d other downstream 161129 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 553079 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 706050 3230021 ~ 3251447 (-)
G325145 mtmr11 other downstream 1860062 2088259 ~ 2097435 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 2388991 1557016 ~ 1568506 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 342491 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 966040 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1863359 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 2290288 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 3090679 7056794 ~ 7062428 (-)

Expression


Co-expression Network