fabp10a (LOC108256542,LOC107677662,LOC103026354,LOC106582922)


Basic Information

Item Value
gene id fabp10a
gene name LOC108256542,LOC107677662,LOC103026354,LOC106582922
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4920980 ~ 4923681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU386810
ATTTgatcagaaatgtatttataatgtatgGAATTGTGACAAGGCTCTAAATTTGGCATTGTATCATGCCAGAATGTCAGTAAGGTTACCAACCTGAAGATGTAATTGAACTCTGGGTTATCCAAATAGAGGGTGTTAATGATTAGAAATGCAGGATTGCCCATTTTCCCCTGGTATAAGTAGCTGAGGTGGTGTACAAGCCTCTACAAGCTGAACAGAGCTTCAGAAATCCATCTTGTGGTGAAGGAGACACCAGAGAGGATCGGCAAAAATGGCCTTCAGTGGAACGTGGCAGGTGTATGCTCAGGAGAACTACGAGGAATTCCTCAGGGCCATATCACTACCTGAGGATGTCATCAAGCTGGCCAAAGATGTCAAACCTGTGACAGAGATCCAACAGACAGGCAACGACTTTGTCATCACCTCAAAGACCCCTGGAAAAACGGTCACAAACTCCTTCACCATCGGCAAAGAAGCAGATATCACCACCATGGACGGAAAGAAGCTCAAGTGCATTGTGAGGCTGGAAGGAGGAAAGCTCATCTGTGAGTCAGACAAGTTCTCACACAAGCAGGAGATCAAGGGTGGAGAGATGATTGAGACTTTGACTGTAGGAGGTACCAGCATGGTCCGGAAGAGTAAAAAGCTGTGATGTGACTTGGCCTGCTGAAAATGTCTCCAGTTCAAAACATGccatctatttaaataaaactgtcatTTGTCAAAATATCGAGTATCa
>XM_026924089.2
GTACAAGCCTCTACAAGCTGAACAGAGCTTCAGAAATCCATCTTGTGGTGAAGGAGACACCAGAGAGGATCGGCAAAAATGGCCTTCAGTGGAACGTGGCAGGTGTATGCTCAGGAGAACTACGAGGAATTCCTCAGGGCCATATCACTACCTGAGGATGTCATCAAGCTGGCCAAAGATGTCAAACCTGTGACAGAGATCCAACAGACAGGCAACGACTTTGTCATCACCTCAAAGACCCCTGGAAAAACGGTCACAAACTCCTTCACCATCGGCAAAGAAGCAGATATCACCACCATGGACGGAAAGAAGCTCAAGTGCATTGTGAGGCTGGAAGGAGGAAAGCTCATCTGTGAGTCAGACAAGTTCTCACACAAGCAGGAGATCAAGGGTGGAGAGATGATTGAGACTTTGACTGTAGGAGGTACCAGCATGGTCCGGAAGAGTAAAAAGCTGTGATGTGACTTGGCCTGCTGAAAATGTCTCCAGTTCAAAACATGccatctatttaaataaaactgtcatTTGTCAAAATA

Function

NR:

description
PREDICTED: fatty acid-binding protein, liver-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0032052 bile acid binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386810 True 739 TUCP 0.44 4 4920980 4923681
XM_026924089.2 False 536 mRNA 0.47 4 4921173 4923671

Neighbor

gene id symbol gene type direction distance location
myom3 myom3 coding upstream 2511 4864569 ~ 4918469 (+)
ifnlr1 NA coding upstream 64828 4842459 ~ 4856152 (+)
LOC113532696 man1c1,LOC108426368,LOC105006133,LOC106582899,LOC106605146,LOC107601975,LOC107713850 coding upstream 150364 4556125 ~ 4770616 (+)
slc9a1a slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107564092,LOC107552533 coding upstream 375633 4501487 ~ 4545347 (+)
dhdds dhdds,LOC106582847,LOC106605152 coding upstream 531519 4378023 ~ 4389461 (+)
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding downstream 84863 5008544 ~ 5019097 (+)
cep72 cep72 coding downstream 123285 5046966 ~ 5056667 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding downstream 173460 5097141 ~ 5105422 (+)
nkd2b nkd2 coding downstream 187392 5111073 ~ 5140807 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding downstream 221289 5144970 ~ 5150227 (+)
G326429 NA non-coding upstream 116921 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 117469 4800572 ~ 4803511 (+)
G326374 NA non-coding upstream 264465 4649025 ~ 4656515 (+)
G326369 NA non-coding upstream 333658 4579550 ~ 4587322 (+)
G326359 NA non-coding upstream 378285 4542427 ~ 4542695 (+)
G326440 NA non-coding downstream 497 4924178 ~ 4924636 (+)
G326458 NA non-coding downstream 59792 4983473 ~ 4983680 (+)
G326462 LOC108256729,LOC108426375 non-coding downstream 96101 5019782 ~ 5029790 (+)
G327071 NA non-coding downstream 617677 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 682189 5605870 ~ 5607099 (+)
LOC113532991 LOC108256125 other upstream 486729 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 526196 4391520 ~ 4394784 (+)
hamp NA other upstream 907442 4011380 ~ 4013538 (+)
G325435 NA other upstream 2351241 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 2705570 2204846 ~ 2215410 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 1100 4924781 ~ 4930155 (+)
klf10 LOC108256604 other downstream 60734 4984415 ~ 4989316 (+)
acbd7 acbd7,LOC108256514 other downstream 387528 5311209 ~ 5314614 (+)
G326997 NA other downstream 408587 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 2300341 7224022 ~ 7247279 (+)

Expression


Co-expression Network