G326462 (LOC108256729,LOC108426375)


Basic Information

Item Value
gene id G326462
gene name LOC108256729,LOC108426375
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5019782 ~ 5029790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU386838
attgcatttgtttattatgaTCAGCCAGATTTTGGGAAACAAAAATGATCACAGTCACAGATCCAATGCACAAGCACAGATGTACATGCAATTTCCAGTTGTCATTTGTACGAAGTTACAGATTCAGCCAAGTTCCATAAGTCTTTTTTCAAAATCTTGAGGCATGAGGAAAGTCCATCATAGTCCTTCATAGTTGTGTGCTCCTAAACCCGTAACACCGGACACTGAAATTTGTGTGGTTCTGTCTCAGATGCCATCTGGCAGAAATGGCTGTTTAAATGATGAGGGTCTTGCTCACAGGTCCATATAGTGCCTCTCAGTTCTGCGATATGAACTCACAACCTCCTGGTGAGCCAGTCCTTACAGGGCTTGCAGAAACAGCATATCATGTCTAAGGACTCTGGTGCGTTTTAGTAGTGTTGTGCTTAGCTTCAGTTGCTGTAGTACTCAAGGAgctgtgcattttgtttttagggAATCTGTGAACCATCACTAGCTTTATGGAACAGAGAAGGCAAAAATTATAAggcaaaaaaatacagcttatgTAGATTAAATGCAAGAAACATttctttgggaaaaaaaaaattgtgcaactggaattcattcatttcaaaaaTGATTTCTCAAATGAGCAACCAGGCATCATTAATGTTCTCATATCactggctgaaaaaaaaaaattagactgTTATTACTCTTAGTCCGTGACCTAGcaaaccagtatcaggatgtatttactGATAGAGATTTCAAAGcagttctgtaagttgctctggatgagggcgtctgccaaaagccataaatgtaaatgaacacCTACATACtacttcattaatataaaataataaaataaaaaataatttgatacGAGTTTGTACACTTCTAAAGGCCTAAAATATTGCCATAACATTCTGTACATGCCTAAACTGTAATGCAGTATTGTGAAATAATGCAGATATATTACATTTGCAAGTCTTGGtaaactcatttttaaaagaataatgtGATAACATGTAAACACAGTAAAAATGTCTAATGATTCAGGCTCAATGAAGAAGGCATTGGGTGAGGTACAGAAgggtttgttattattattattattattattattattatgttcaaTTTGAGAAAccagatttcattttaattacattttcgGCTTTTAGAATGGGCTAATATTGATTTGGCAAATCATCTCCCaggatattttaatataaatgtgttgtGCTTATTACAGAACCCCTGACTTTGAGAACCATTGTCGCTCAAAACTGAGACTCCAGTTTTCTGTGTCTCCTGCTTACTTAAGACATTTGGGAATTTGTGCAGGTAtttaatattcactatataaaGCATTAATTATAAGTTGAAGTCCAGTAGAATAAAATAGATTACAGTAACTTAATGGAATTGAGAAAGTCAACCACTTTAAGTCAAATAAACAGCTTAGAGTTTGCAGGCtatgtagaaaaatgaaaaagaacaaaaatacaggAAACCTGCACAATTACATTCTTTATACGAAAGAAAAACTTGATCAATTATTTCAATTAATACTATTATTGACAATGTTCACATGGagaaatacaaacaaatgatGGACTCCATACAGTATGCTGAACAACTGAAATGTGGAGGGATGTAGACATTACCCATCATGCACCACTGAAAAGAAAGTAAGGGCTTTATATTTAGTAGCAGATAATGGAGAGAACCAACATGGCTACCAGTGACACTTCACATCAAACTGTTGAGAACAGTACTGACATTTGGCAAAATCTCATCACTTTGTCACTGGGATTAGAGTAATAAAGGGGATTTAGACTGGGACTGGCAACATGGCATCATCACAACATCTCACTCCAGTGGCTAAACAACAGCATGTCACTCgattcatataaaaataaatacagctgtacacctgcagcaaatacacatatttacaaGACAAAATGGAGACTGTTTCAGTCCAGCCTGttgtacattacacacatcataGGATATGACAAGACATGTGCCCATAATCAGTTTTATACCATGGCCATGGAAACGGAGTCAAAAATGCCTTCACAGTTCTACTTTTTATTCACTGATAATATTTCTAAATTCGGATTAAGGTACTGTGTTTGCCATACTGATGAGAAAATGCCACACAAACAACCCTGTATTCACTCCTTCGGATGTTTTCTGGTAGCTTTATCATTCAATGGCGCCATTTTTCAAAAAGGCGGAATTATGGAAGCCCAGTTAGCAGTTGGCGCTAACTGTATTTAGAGCGTAATTTTAGCTGTATGGAGCATTTATTTAGTCATtaaccaacacatctgaggtaaatgttgatattctaGACAACTTTGTCTGGTTtctgcattctctctctgtttacatTCTCTACAATAAAAGACTTCCAGGttacttgctagctagctatctagctaaatTCTTCACCTCAGTCATTAACTAGCCTCCACTCTTAGCAGTTGACAGATTCCCAGTTGATTAGCAGCACTGTAAATCAGCAAGTATAAAATAGCAGCTGactgaataaattaaatacatttatttgctCATAATTTTCTAGTACCACCTCACTAAGCGATAGTACCTTGTAGTGTGAACTTGACAACGTtttttgcacacatttttatacattttccccccttaataataaagtattggcacccttagaTTAAATTAGGTGTGATCGCTTTGTCTCATGTTCAATAATACTTTTGATAGGCATCAGGACCaaaattttaaagtaaaataagtaTTTTTCTGGTGATTACATTAAAAAGTACTTAATTAGTCAACTACCCATACCTgtcatgaataatcatgcatatttaaaggtaaaaatatgaattaacatttgtgtaaatgtattcCTGAGTCAAAGCGATAGTTCTGTCCACCATTTTAAACCTTCCAGTGAACAGTATTATAGTACTGCCTTTCTTCTCTCATTTATATGTGTCCAAAATAAAGGCTCTCAGTCAGACTGCTGTCCTTCTGCTGTTTTCAGACATGACAGACTTTATCTCAGGAGCTCGGGGGGTGTGGAGATATTTTGAAGTGtccacaataacaacaatgtgTTGCATATCTTCTAACTGattatcggcacatgcctaTTTGTATGTACACTTGCACAAATCTCTTTAAGAAGAAGTCCTACATGTTTAAAAGAATTCTATGGCCACCATATTTCACAGTCAACAGCTCACATTGTAGTATAACAGAGGGACATGAGGACTCCACTTTAGGAAGTATATCGGTCTAGTCCAAGTTAACTTTCTTTAAATACATGATTTAGACCTCATGAATGGTTCTCTCAGATGGCCGGTACTCGGATCCTGTGGCTGAGGACGCGATGAATGAGTGTGTCTTGCGCTTCATTCGGCCGCGTTTGGTGGCCAGGGAAATGCTGTGCTTGCTGGATGAGATGATGTCTGAGATGAACCTCTTGCAgtctacacacacctccatGGTGCTCCAGTCTTCAGTCAGCTCCTTGGGGAGCTCAATGTCCTCACGTGAGGACGACGTTGAAGACTGACGCGATGACTTGGACAGTCTGAGAGGAAAATGCATGGCTTCATCCTGAGCAGCTacttcttttattaaaaaatttgaaTTGAGCATGCAAGAGTTCCTTATTGACCCACTAAGGATCTGGAGCTCTGTCTGCACGGAGGGACGAACTGTCGGACGTTGGTGGGTGTCTCCTTCTCTATGGAGTGTCTTCTCTGTGCTGGCTGCTTCCTCTCCGGCTGCGGTGTGGAGGAGATGGGCAGGAACATGGACTCCGGTGATGTATCCTCAACTATCGGCGTGGAGATGCTAGAGCTGCTGGCTGACCTTTGACCCACTGTCTCATCCTGCAGAATGGAACAGACAGTAATTAATAGTTATGGTAATCTTTATGtgttCCTTCATACACACTCACGTCTGAGTCTGAGCTGCCCAGTTCGGAGAGAGTGGGGGCATGGAGTCTCTTCCTCTGGAAGCCGCTGGTGCCATTTGATTGGAGTGACGAGCCATTAGCTAACGAGAGTGAACTGGATGCCTTCCTTGCTGCATCAGGGGCCGAGACGTCTGGACAAAATGACACATTGGTGTCACACAACAAAACATGGGGGTGTATGGGTGCAcgagtgggtgtgttagagaagGTGGGAGTGAAGGTGAGTCCACAATCTGgtgttacacacatacacacatatgcacaacATGTAAGTCACACAGTGTGCTTAGATGAAAGTGTTAATTGACCATTTTGAGGCCTGTCCATCTGACAGATCTTGTCAGCTGAGCACACCATCATTTGTGCCAGGTATCAAGAGATAAATTtacaaggttgccagattggatcaAAAGTTATCAATATGCGGTATGGTTTATTCACTATTAAATCAGGGCTTTCAATTGAACTGCTAATGACACAAAAGCATGAAATGATATGACACGGGTTGCACGTTTCACTGAAGCATCACGGACAAACCAAATCAAAGGATCGAATCACACTGAAAACAGGGCACAGGCAGATCGCACGGCTTTACCTGAGGAGTCAAAACTCTGAGACATGCTAAGCGGCCGAATTACTGCAAGGACAAAACAGTCAGCGGGTTAAAACAGGCAGATTTTCCTGGTATATTAGAAACAGTGGAAAAATCTCTTTCTGATTCCATCTCCGGGGAAATTATGACTAGCTTTTTAAACCTATTTCAGATATCAGATATTCTTTGGTGTCTAGAAGGGTCAGAAAATATGAAATTGCCTTCATGAGCTAACATCAGTAGGTCATTAAAGCTTCAATCTAAACTTCTAAGTGAGCAATGGAAGGacacattgggcctcatttatcaagctgggtaagaagggatttatttgtaattcGTATGACCGTTTACAGAAGAAAtttggtgttcatgaaaatcccataaattcagaaaaacattcGTATCCTAgttgtgctcctgagtgtgtgtgaaattaagcATACAAAGACTAACTGATGTAAACCTCAacttgatcgacttcaaatcatataatttgcatggattactgccaTCAAAAACAATTTGTGAAAACTgtggttttatattattggcattaattaaagaacatgaaaaataaagaaagcgagccaataaattaaaacaaagaaatatatttattcaattatgacaaaagaaatgccagCGCTTTAACGGAGGATgggcctgtctgtctgctaaACGCCTCAGCTGATGGTACATTTAGTCCtcgtttttttattattagtataatATCTTAGTAAACATTTTTactggcatagaagtgagtcaaaataacgcCCATTTCTTTCAGACTTTACCCTGATCGTCcatttcatgctcccagctgtctttgcacttgaccttttatggagttttgtgggcgtcactaaatgcaaatgaactgTGTCAGGAACACACTTTGCATTTCAAGGGTGATCAACATACGCATGCAAGTACAAAGAAATGAGCaattctgaaacttttgtaaatcccgAGGAAAATATTTTGTTCGGTTTGGCtcacgcaaacatttacacacaactttactacaagattgataaatgaggccaacTGATAGCGATTGGAGCAGACTGTCAGTTTAATGCAGCATAGCAATGAAAAGTGAGCTACATGACTCTAATGAACATCTTTAAATCAACAATTTGTGGCTCAATTGTCAATTTAAATGGACTTTAGAAGAATATACAGCAAATTATCATCATAAGATGAATTATCTGTACATGATGTGTGCATGTTATCCAAAGCTCTGTATCAAATcacacactatgcactatactcTGCTGTTGGTAGATAAGGAATCAAAGatttaattaattcttttaTCAAATAGTGACAGTTTTTCATTCATTGAGTCATCGTTTatcccttcttttttttaagttttagtaAATTATTGTACTATTAATAGTACAGTCTGTCACTGATTCTCCAAAATGTGAATGTGGACCAAAAGTGGCTagtgcagtaaaaaaaagtagagGATATGGGACGCCACccaatatgtttgtgtgtacatgtgtgtttgcGGTCTCACCCATCCTGCTCCTGCGAATCTGGTCAGGTGACACTGGGCGGAGCTTCCTCTCCGATTTTATCTCCTCCAGGATCCTTTCATGGAGGCTCGGAGGACGTTCCACCTGAGGCTTCAGCTTACGTGCTGccacctgcaaacacacacacacacacacagtggtgtTGTTCATCTGGGATTGTCATTGGAGTAGCTGAACATGAATAACTAAATAGCTAGCTTCAAAGGTTACcatcactcattcacacatacaataaagtattaaataaaaaaaggtattAAATTATCcagaattaaataaacatcactaaaatgtactgtatgtgtgttttgagtgTATTGATGAAAGTGTGATGGCACTCACAGGATTGAGGGGAGGTCTGGATCGGATGAACTCCAGGATCACCTCATGTGCACTCTTCTTTAACCGAGGAGGAATGTCTCCATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU386838 True 6545 lncRNA 0.39 5 5019782 5029790

Neighbor

gene id symbol gene type direction distance location
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding upstream 685 5008544 ~ 5019097 (+)
myom3 myom3 coding upstream 101313 4864569 ~ 4918469 (+)
ifnlr1 NA coding upstream 163630 4842459 ~ 4856152 (+)
LOC113532696 man1c1,LOC108426368,LOC105006133,LOC106582899,LOC106605146,LOC107601975,LOC107713850 coding upstream 249166 4556125 ~ 4770616 (+)
slc9a1a slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107564092,LOC107552533 coding upstream 474435 4501487 ~ 4545347 (+)
cep72 cep72 coding downstream 17176 5046966 ~ 5056667 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding downstream 67351 5097141 ~ 5105422 (+)
nkd2b nkd2 coding downstream 81283 5111073 ~ 5140807 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding downstream 115180 5144970 ~ 5150227 (+)
ncam3 NA coding downstream 160228 5190018 ~ 5203404 (+)
G326458 NA non-coding upstream 36102 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 95146 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 215723 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 216271 4800572 ~ 4803511 (+)
G326374 NA non-coding upstream 363267 4649025 ~ 4656515 (+)
G327071 NA non-coding downstream 511568 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 576080 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 803203 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 812429 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1618490 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 30466 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 89627 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 96101 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 585531 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 624998 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 281419 5311209 ~ 5314614 (+)
G326997 NA other downstream 302478 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 2194232 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2871725 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3342895 8372685 ~ 8378896 (+)

Expression


Co-expression Network