G326630


Basic Information

Item Value
gene id G326630
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4501589 ~ 4502601 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU387029
AGTTTCATCAGGGAAGCCAGCAGGATCCAGAGGAATATGACGAAAGGATTGTGGACGTGTTCATAATCGAAATCCAACACGGGGAAAATCTTCTTGGTCAAATTGCCCTGATGAGCTCCTCCATGTCCTGAGGTCTTGGGATCGCTGCTCGGCTTCTCGTGGGAGTTCTGCGGGGAACTGGCGAGCACCGAGATCCCGGagaccatcaccatcatcaccaccagcagcagcagtaaagTCCGGTCCACTGGTGATGCCATGGTGGAGTGTGTTTACGACCTGACACGAGCTTCAGGAAAATATACTAGGCAGCATCTTTAGAAATTGTAATCTCCGTCTGGCTAATCGTTTGAGTTAGCCAAGGCTAGTTCCTAGTTTCCTAACACTCAACACTACAGCCAGCTAGCTAGAATGCTATGCTAACACGCCTTTTTCAGGTATGTAATCCAACAAGGAATTTAAGTTTAGCTTTGTCAGTTAGCAGCAGCTAATAACAttctgagagggaaaaaatgatgCTAACCTGCCATTCGTTCACGGAAGACTCAGAAATGACAGTCGGACACCGGGAGAGACGGATACgagtttattctctctctctctctctctctctctctcacacacacacacacacacacacacacacggacgaAAAAGAAAGGACGTTCACAATGTCAGCATCCAGCGCTCGCAGCGCGTGAGCCGGGTCTGAATGTTTGAATTTAGCGCGTGACTCTTCTCCGCGAGACCGCCGCGCGCACGaacaaatacatatacaaagaaaaaaggcaaagcAACGAACTAACTGAAGACTTTTCTAAGACTTCCACTCTGTTCCTCACGCTCTGTGCACTCTCCCTTCAGGAATGAAACGCTCCTGCTGAGGGTCAGGGTGGAGGGAAGACAGGGGGGGAGGTTAGGTTTCCGTTCCGCTTTCCGTTCAGGTGCCGATGCAGGAACGTTAACAAACGCCTCGCGCGCACAGAGTCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387029 True 993 lncRNA 0.50 2 4501589 4502601

Neighbor

gene id symbol gene type direction distance location
si:ch211-107n13.1 LOC108256083 coding downstream 35143 4450350 ~ 4466446 (-)
ago1 ago1,LOC108256363,LOC103040377,LOC103367053,LOC102230823,LOC107379324 coding downstream 126695 4350718 ~ 4374894 (-)
si:dkeyp-97a10.3 LOC108256724 coding downstream 227776 4261821 ~ 4273813 (-)
LOC113532587 LOC108256689 coding downstream 244617 4250942 ~ 4256972 (-)
LOC113532948 NA coding downstream 256729 4242354 ~ 4244860 (-)
azin1a azin1 coding upstream 485072 4987673 ~ 5001824 (-)
spire1b LOC108256729,LOC108426375 coding upstream 517172 5019773 ~ 5045469 (-)
LOC113532791 tppp,LOC107565752,LOC107601987,LOC107754442,LOC107677661 coding upstream 555252 5057853 ~ 5070186 (-)
zdhhc11 LOC108256534 coding upstream 569646 5072247 ~ 5085068 (-)
brd9 brd9,LOC107754443,LOC107659091 coding upstream 583297 5085898 ~ 5097186 (-)
LOC113532978 NA non-coding downstream 90188 4408491 ~ 4411401 (-)
G326597 NA non-coding downstream 106815 4385075 ~ 4394774 (-)
G326557 NA non-coding downstream 307342 4192950 ~ 4194247 (-)
G326488 NA non-coding downstream 424621 4061916 ~ 4076968 (-)
G326236 NA non-coding downstream 499764 4001618 ~ 4001825 (-)
G326830 NA non-coding upstream 464697 4967298 ~ 4968547 (-)
G326875 NA non-coding upstream 602231 5104832 ~ 5105966 (-)
G326940 NA non-coding upstream 678215 5180816 ~ 5181017 (-)
G326945 NA non-coding upstream 695622 5198223 ~ 5199406 (-)
G326958 NA non-coding upstream 753194 5255795 ~ 5256011 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 154336 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 535474 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 705221 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1097171 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 1250142 3230021 ~ 3251447 (-)
ubr5 ubr5 other upstream 429554 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1326873 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 1753802 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 2554193 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2876130 7378731 ~ 7386347 (-)

Expression


Co-expression Network