G326945


Basic Information

Item Value
gene id G326945
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5198223 ~ 5199406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU387411
CATTTGGTAGCGCACTACATAGTGCTGAATGGGAGAGGCTCCATCACTGAGCTGCTTTATTGGAATTGAATAGGAGTTTCTCTCTATCTTGCCCTCGTCTGCAGACAGTCCAGGCATGTCTGGCTCCCCtaGTGTGGCCAGGGTGCGAATCTTCTCTTCAGCAGAAAAGTCTCCACGAAAATGCTTGTTTTTAGCAGCAAAGCGGACAGAGTATTCAGTGTATGGAGCCAGAGATGTGACCTCCAGTCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387411 True 251 lncRNA 0.49 2 5198223 5199406

Neighbor

gene id symbol gene type direction distance location
LOC117595762 NA coding downstream 19205 5178282 ~ 5179018 (-)
LOC117595761 NA coding downstream 29597 5167096 ~ 5168626 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 101037 5085898 ~ 5097186 (-)
zdhhc11 LOC108256534 coding downstream 113155 5072247 ~ 5085068 (-)
LOC113532791 tppp,LOC107565752,LOC107601987,LOC107754442,LOC107677661 coding downstream 128037 5057853 ~ 5070186 (-)
si:dkey-65b12.6 LOC108256587 coding upstream 6155 5205561 ~ 5216300 (-)
rpp38 rpp38 coding upstream 108035 5307441 ~ 5309104 (-)
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding upstream 132723 5332129 ~ 5349833 (-)
slc25a40 slc25a40,LOC107666862,LOC107592430 coding upstream 192011 5391417 ~ 5400856 (-)
cldn12 cldn12 coding upstream 258827 5458233 ~ 5463036 (-)
G326940 NA non-coding downstream 17206 5180816 ~ 5181017 (-)
G326875 NA non-coding downstream 92257 5104832 ~ 5105966 (-)
G326830 NA non-coding downstream 229676 4967298 ~ 4968547 (-)
G326630 NA non-coding downstream 695622 4501589 ~ 4502601 (-)
LOC113532978 NA non-coding downstream 786822 4408491 ~ 4411401 (-)
G326958 NA non-coding upstream 56389 5255795 ~ 5256011 (-)
G326960 NA non-coding upstream 57645 5257051 ~ 5257276 (-)
G326981 NA non-coding upstream 95326 5294732 ~ 5295232 (-)
G326989 NA non-coding upstream 110643 5310049 ~ 5310265 (-)
G326995 NA non-coding upstream 114801 5314207 ~ 5314655 (-)
ubr5 ubr5 other downstream 220696 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 850970 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1232108 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1401855 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1793805 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 630068 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 1056997 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1857388 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2179325 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4952091 10151497 ~ 10156800 (-)

Expression


Co-expression Network