G327071


Basic Information

Item Value
gene id G327071
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5541358 ~ 5541889 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU387573
TTGCATGTATTATGGTAGTTTATTTTCTTCAtcaagtagaaaaaaaaatacaaataataaaactacCATTTAAATCCACTGCActtctcaaacattttaatcttttctgAAGAAATGAACTCAAAATGAATCAGTGTTTCTGGTTGAATTTACGCAATAGCTGCTAGGTAGTCTTTCACTTCTGCAGGAGTCAGTCGCCTGAAGCCGCTCTCGTTGCAGATTCCCACCTCAATGTTGTCCTCCGTCATCTGGCCTTCAAAGCTTTCCTGTAACACCTTGAGGGTCAAAATAGCTGTGTGAATGGCATCTTCCAGTTCCAGATCCTCATTGTATCTAAAATGACACAACACAGAGGTGGTGGAACAATAGTATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387573 True 375 lncRNA 0.38 2 5541358 5541889

Neighbor

gene id symbol gene type direction distance location
adam22 adam22,LOC107719137,LOC107714333 coding upstream 48619 5415932 ~ 5492739 (+)
dbf4 dbf4 coding upstream 130308 5400933 ~ 5411050 (+)
rundc3b rundc3b,LOC107666772 coding upstream 154732 5356182 ~ 5386626 (+)
crot crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792 coding upstream 210144 5317198 ~ 5331214 (+)
nmt2 nmt2,LOC107738873,LOC107681575 coding upstream 234219 5298302 ~ 5307139 (+)
mrpl32 mrpl32 coding downstream 4662 5546551 ~ 5547833 (+)
ccdc127a ccdc127 coding downstream 8336 5550225 ~ 5553304 (+)
rnf144b LOC108256380,LOC108440759 coding downstream 23757 5565646 ~ 5583027 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding downstream 42527 5584416 ~ 5591733 (+)
sqlea sqle coding downstream 51960 5593849 ~ 5603013 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 511568 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 557678 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 616722 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 737299 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 737847 4800572 ~ 4803511 (+)
G327178 NA non-coding downstream 63981 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 291104 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 300330 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1106391 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1407670 6949559 ~ 6961376 (+)
G326997 NA other upstream 203107 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 226744 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 552042 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 611203 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 617677 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1682133 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2359626 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2830796 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2846298 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 3073184 8615073 ~ 8665836 (+)

Expression


Co-expression Network