G327100


Basic Information

Item Value
gene id G327100
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5392222 ~ 5393582 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU387604
gaataaaaaaaacgtatCTACTTGATTTATGTAAAGCAGGCCAATGAAACAattcaaagctttatacagATTTCATTTACATCGCTAAACATTGCTAATTCTGCTTCACGAAAGTGCTGTCTTTCGATtaagttttttttccaaacacagCACAGTCTTTTGCTCATAGGAGAAATATCTGCCAGTGCTGGGCGCTTGCTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387604 True 201 lncRNA 0.36 2 5392222 5393582

Neighbor

gene id symbol gene type direction distance location
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding downstream 42389 5332129 ~ 5349833 (-)
rpp38 rpp38 coding downstream 83118 5307441 ~ 5309104 (-)
si:dkey-65b12.6 LOC108256587 coding downstream 175922 5205561 ~ 5216300 (-)
LOC117595762 NA coding downstream 213204 5178282 ~ 5179018 (-)
LOC117595761 NA coding downstream 223596 5167096 ~ 5168626 (-)
cldn12 cldn12 coding upstream 64651 5458233 ~ 5463036 (-)
washc5 kiaa0196,strumpellin coding upstream 99647 5493229 ~ 5512596 (-)
LOC113532914 LOC108256385,LOC108440755,LOC103044808 coding upstream 121260 5514842 ~ 5522545 (-)
LOC113532747 atad2 coding upstream 129211 5522793 ~ 5540977 (-)
psma2 psma2,si:rp71-45k5.4,LOC108440756,LOC107592434,LOC107686300,LOC103045926,LOC107714337,LOC107724313,LOC108425697 coding upstream 147775 5541357 ~ 5546339 (-)
G326995 NA non-coding downstream 77567 5314207 ~ 5314655 (-)
G326989 NA non-coding downstream 81957 5310049 ~ 5310265 (-)
G326981 NA non-coding downstream 96990 5294732 ~ 5295232 (-)
G326960 NA non-coding downstream 134946 5257051 ~ 5257276 (-)
G326958 NA non-coding downstream 136211 5255795 ~ 5256011 (-)
G327362 NA non-coding upstream 344955 5738537 ~ 5739588 (-)
G327505 NA non-coding upstream 442488 5836070 ~ 5836306 (-)
G327507 NA non-coding upstream 443907 5837489 ~ 5837782 (-)
G327508 NA non-coding upstream 444301 5837883 ~ 5838277 (-)
G327560 NA non-coding upstream 689784 6083366 ~ 6084649 (-)
ubr5 ubr5 other downstream 414695 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 1044969 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1426107 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1595854 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1987804 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 435892 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 862821 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1663212 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 1985149 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4757915 10151497 ~ 10156800 (-)

Expression


Co-expression Network