G327178


Basic Information

Item Value
gene id G327178
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5605870 ~ 5607099 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU387696
acttctttGTCCATGCGTCTTTAAAAGTTCTGCTTTCgttgttgacttttttttttaaagtaattttgtCAGTTTGCTATTCAGAATggggaaagtaaataaaatgaaaattctttgACAGTCTATGGAAACTCCTTTTCTGacctaatgtctctagccctgtagctagttaCTGGTcaaatgagctgccttcagctaaatattttatgtattagaGTTatagtgttttaatttttttcccctacctGTTAATGAGCTATTATATCctgccaaataaatacatttccagTCATTGTCTGCATTCAAATGATTTAGATTACAATACATTAACCTGAATACAGCTGTAAAGACTACAAAGTGCACCAGTTCAAAAGCTACGTGCAGAGTTTGTGTATTAGACTCAGAAAGGACTTACCTTCCTCCACCAAATGCCAGGGAGTCCATGTCTCCTTTGATAAAGAACATGTTATCACCTGTCCATTTGTAGACCTGAAAGCACAGAAAATTCAAGCAACAATCCATTTCAAAGAGGTCATGTGGACATACTGACTTAAAAATGCACTGAGCGTcaaataatctgtaaataaaccaCACAGACAACACACCTCAAACTGTGGATAGAAGGAGAAGAGAAACGTTTCTCCTGTGCCGTAAAATCCGTCGCTGACTTTAAAGGGCTCTGATGCTAATGCCCCAAACACCTAGACATCACACAGATCAATGTTATTATGGGCTACCATACAGCCTATACGGGCTATTGAATTCCTCCAGTGCATTTCTCTCTGACTAAATGAACTGGTAAAATGCACAAAGGCAATGGGTTGATATCATCGTAACAGAAAAATGTTGCACACAAGAGCAAAATGAATCAAGGTTTCAGTCAAAATGCCAACAGTGGGCCATTAGTCTAGCAGACTAACGCTCATGCTAACCAGTCCCCCAAGCTTCCATCCACGTCAAGTACATATACAAAGAAAAAGCCTTAGTTCAGTCAAGCTTTGGTAGAGTCTTACCTGCCCGTCACTGTCTTTAATGACGAGGACAACGGGAGAGTCCTGCCCCTGCATGATCCGGTACAGGGTTTTAATACTCATGCCGTGCTTGGACGTGCTGAATGCCAGCGTCCATGGATAGCCTATGGTTCTGGGtgggagatgctttgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387696 True 1165 lncRNA 0.41 2 5605870 5607099

Neighbor

gene id symbol gene type direction distance location
sqlea sqle coding upstream 2857 5593849 ~ 5603013 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding upstream 14137 5584416 ~ 5591733 (+)
rnf144b LOC108256380,LOC108440759 coding upstream 22843 5565646 ~ 5583027 (+)
ccdc127a ccdc127 coding upstream 52566 5550225 ~ 5553304 (+)
mrpl32 mrpl32 coding upstream 58037 5546551 ~ 5547833 (+)
si:dkey-122a22.2 LOC108256697 coding downstream 189063 5796162 ~ 5905417 (+)
dpys dpys,LOC107686378 coding downstream 459034 6066133 ~ 6084254 (+)
zgc:101716 LOC108256737 coding downstream 697482 6304581 ~ 6312558 (+)
upk1a upk1a coding downstream 711988 6319087 ~ 6326360 (+)
LOC113532640 LOC108256717 coding downstream 1047676 6654775 ~ 6759822 (+)
G327071 NA non-coding upstream 63981 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 576080 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 622190 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 681234 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 801811 4803837 ~ 4804059 (+)
G327385 zfpm2 non-coding downstream 225894 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 235120 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1041181 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1342460 6949559 ~ 6961376 (+)
G328208 LOC108256403,LOC108426361 non-coding downstream 1416056 7023155 ~ 7029401 (+)
G326997 NA other upstream 267619 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 291256 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 616554 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 675715 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 682189 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1616923 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2294416 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2765586 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2781088 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 3007974 8615073 ~ 8665836 (+)

Expression


Co-expression Network