G327391



Basic Information


Item Value
gene id G327391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5842219 ~ 5842438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU387927
GGGAGGGTGCCCGCTGCCCTCACCCACTGCCGTTCTGCCATCCTGGCACAGACCCTCGGCTGCCCCGGGTGGTGCGGCGCGGCCATCTGGAGCCGACATCTGTCCCTGTGTTGATCGCGCGGGTTTTAGCACTTGATCAAACGCGTGGCGACAGGAAATTGCTCCTCTCCCCGCAGGAAAAGGCGCGAGGCTTATGCGGGGGTAATAGAGCAGAACAGAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU387927 True 220 lncRNA 0.64 1 5842219 5842438

Neighbor


gene id symbol gene type direction distance location
sqlea sqle coding upstream 239206 5593849 ~ 5603013 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding upstream 250486 5584416 ~ 5591733 (+)
rnf144b LOC108256380,LOC108440759 coding upstream 259192 5565646 ~ 5583027 (+)
ccdc127a ccdc127 coding upstream 288915 5550225 ~ 5553304 (+)
mrpl32 mrpl32 coding upstream 294386 5546551 ~ 5547833 (+)
dpys dpys,LOC107686378 coding downstream 223695 6066133 ~ 6084254 (+)
zgc:101716 LOC108256737 coding downstream 462143 6304581 ~ 6312558 (+)
upk1a upk1a coding downstream 476649 6319087 ~ 6326360 (+)
LOC113532640 LOC108256717 coding downstream 812337 6654775 ~ 6759822 (+)
tbrg4 tbrg4 coding downstream 1187343 7029781 ~ 7043670 (+)
G327385 zfpm2 non-coding upstream 8957 5832993 ~ 5833262 (+)
G327178 NA non-coding upstream 235120 5605870 ~ 5607099 (+)
G327071 NA non-coding upstream 300330 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 812429 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 858539 4983473 ~ 4983680 (+)
G328024 NA non-coding downstream 805842 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 1107121 6949559 ~ 6961376 (+)
G328208 LOC108256403,LOC108426361 non-coding downstream 1180717 7023155 ~ 7029401 (+)
G328222 NA non-coding downstream 1202608 7045046 ~ 7045278 (+)
G328260 NA non-coding downstream 1285728 7128166 ~ 7136722 (+)
G326997 NA other upstream 503968 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 527605 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 852903 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 912064 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 918538 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1381584 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2059077 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2530247 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2545749 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 2772635 8615073 ~ 8665836 (+)

Expression



Co-expression Network