G328208 (LOC108256403,LOC108426361)


Basic Information

Item Value
gene id G328208
gene name LOC108256403,LOC108426361
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7023155 ~ 7029401 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU388815
CTTGGACTTGCTTGTCTATGGCTTTGAGCATGACTTCAGTGCCTTTGCTGAAGTATTGCACAGCCTCGGCGCCTGTGTGAATCTGACCCAGGTACATGTATTTGGTGTGGCCTTCTTCTGGACTCAGTTCCACTGCTTTCAGAAATATTTGTTTGGCTTTATCCATGTCCCCCAGCTCAGCACAGATGTTTCCTAGCATGTCCAGAACGGTCAGGTTGGTAGGTTCAATGTCCAGGGCGCGCTGACAGAACATCTTTGCCATTGGAAAGTCAAAGTTGTCCATACATTCTTCTgtCTTTTCCAGTAACTGATCGATGGTGTATTTTTCAGCCGTCTTCTTTTTGGCTCTGTCCTGCATCCTGGCTTTCATCCTGTCCTGTGGTGACACTGCTGTGTTCTCTAGACCTCTACGGTTCTCTTTTCTTTTAGGTTTGCCTTTCTTTTTAGCCTTTGCTTGTCCTCCCATGGTTGTGTTACGATGACAGCAACTCTTGTGATACACAAAACCTTTTATTTGATATTGTTTATAGCGCAGATATGCATATACAGCTCCGAAATGGAAAAGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU388815 True 568 lncRNA 0.45 4 7023155 7029401

Neighbor

gene id symbol gene type direction distance location
LOC113532640 LOC108256717 coding upstream 263333 6654775 ~ 6759822 (+)
upk1a upk1a coding upstream 696795 6319087 ~ 6326360 (+)
zgc:101716 LOC108256737 coding upstream 710597 6304581 ~ 6312558 (+)
dpys dpys,LOC107686378 coding upstream 938901 6066133 ~ 6084254 (+)
si:dkey-122a22.2 LOC108256697 coding upstream 1117738 5796162 ~ 5905417 (+)
tbrg4 tbrg4 coding downstream 380 7029781 ~ 7043670 (+)
nacad LOC108256401,LOC107579097 coding downstream 21251 7050652 ~ 7065149 (+)
rbm12ba NA coding downstream 91615 7121016 ~ 7123391 (+)
tex10 tex10,LOC107689903 coding downstream 124422 7153823 ~ 7185065 (+)
alg2 alg2,LOC107595974,LOC107706186 coding downstream 357179 7386580 ~ 7390884 (+)
G328161 NA non-coding upstream 61779 6949559 ~ 6961376 (+)
G328024 NA non-coding upstream 314376 6648280 ~ 6708779 (+)
G327391 NA non-coding upstream 1180717 5842219 ~ 5842438 (+)
G327385 zfpm2 non-coding upstream 1189893 5832993 ~ 5833262 (+)
G327178 NA non-coding upstream 1416056 5605870 ~ 5607099 (+)
G328222 NA non-coding downstream 15645 7045046 ~ 7045278 (+)
G328260 NA non-coding downstream 98765 7128166 ~ 7136722 (+)
G328313 NA non-coding downstream 238333 7267734 ~ 7268762 (+)
G328427 NA non-coding downstream 343879 7373280 ~ 7373500 (+)
G328441 NA non-coding downstream 362840 7392241 ~ 7392448 (+)
G326997 NA other upstream 1684904 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 1708541 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 2033839 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 2093000 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 2099474 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 194621 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 872114 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 1343284 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 1358786 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 1585672 8615073 ~ 8665836 (+)

Expression


Co-expression Network