G328427


Basic Information

Item Value
gene id G328427
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7373280 ~ 7373500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389077
CTCAGTTGTTGGTGTGTTGCATAATCgctgtgctcactgccccatttagcgTGCTAGAGTTAGTAATCCTCCTAGTGGCAAAAATGGGAACTACAACAAGCGTTAAACGAGGCCCATCTGGGCAGGAATCACGATGCCCCTTGCTCTCCTtgtgaatgttttgtttatgagtGGGATAGAAGCAGCAGATAGGACAGTTCATGATATTTCCTTAGTATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389077 True 221 lncRNA 0.45 1 7373280 7373500

Neighbor

gene id symbol gene type direction distance location
tex10 tex10,LOC107689903 coding upstream 188215 7153823 ~ 7185065 (+)
rbm12ba NA coding upstream 249889 7121016 ~ 7123391 (+)
nacad LOC108256401,LOC107579097 coding upstream 308131 7050652 ~ 7065149 (+)
tbrg4 tbrg4 coding upstream 329610 7029781 ~ 7043670 (+)
LOC113532640 LOC108256717 coding upstream 613458 6654775 ~ 6759822 (+)
alg2 alg2,LOC107595974,LOC107706186 coding downstream 13080 7386580 ~ 7390884 (+)
LOC113532919 frrs1l,LOC107595962 coding downstream 43874 7417374 ~ 7424191 (+)
tmem245 tmem245,LOC107706205,LOC107687814,LOC107723436,LOC107595951 coding downstream 52779 7426279 ~ 7451187 (+)
ino80c ino80c coding downstream 205489 7578989 ~ 7583831 (+)
trim35-28 LOC108256499 coding downstream 517128 7890628 ~ 7897309 (+)
G328313 NA non-coding upstream 104518 7267734 ~ 7268762 (+)
G328260 NA non-coding upstream 236558 7128166 ~ 7136722 (+)
G328222 NA non-coding upstream 328002 7045046 ~ 7045278 (+)
G328208 LOC108256403,LOC108426361 non-coding upstream 343879 7023155 ~ 7029401 (+)
G328161 NA non-coding upstream 411904 6949559 ~ 6961376 (+)
G328441 NA non-coding downstream 18741 7392241 ~ 7392448 (+)
G328620 NA non-coding downstream 283641 7657141 ~ 7659079 (+)
G328750 NA non-coding downstream 731762 8105262 ~ 8105462 (+)
G328754 NA non-coding downstream 761580 8135080 ~ 8135455 (+)
G328755 NA non-coding downstream 762017 8135517 ~ 8136163 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 126001 7224022 ~ 7247279 (+)
G326997 NA other upstream 2035029 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2058666 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 2383964 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 2443125 4924781 ~ 4930155 (+)
LOC113532663 NA other downstream 528015 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 999185 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 1014687 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 1241573 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 1395245 8768745 ~ 8821311 (+)

Expression


Co-expression Network