G328439


Basic Information

Item Value
gene id G328439
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7376887 ~ 7378436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389090
AATGTGTTAGTGACAATACTGTACCTACCATGTCAAGAAAATATCCAGGTTTGCCATAATAATATAGATTTATGCCTTTTCTTTAGTGAATAATTTCACCTAGATGCTGTAGAttactgtagtgtgtaatgtaatgctaTTATTTCCATCTGCTTGgtgctcaaaatatttgtacagtcaggtccataagtatttggacagtgacacaattttcataattttgcctctgtacaccaccacaattgTTTTGGAATGGAGCAATCAAGAtttgattgaagtgtagactttcggctttaattcaaggggtttaacaaaaatattgaattaactgtttaggaattacagccaaatTCCTCAATTTTTTAgagtccttccattttcacaggctcaaaagtaatcgGACggttgactgataagcagtttcatggccttgtgtggcctgtttttttgttatttcatgacaaattaaggagataaaaggtctggagttgattccaagtgttgaatttgcatttcaTGGGagctctcaatatgcagtccaaagaggtgagGATacaagtgaaaaaacaaaacagacctatcagagagacagcagaaagttTATGAGTGGCCTAAggaacaatttggtacattcttaaaaacaaGGAATGcgctggcgagctcagcaacaccaaaaggccggGAAGATATCTGGATGAATGgagaattctttctttgctgaaGAAAAAcgccttcacaacatctagtgAAGTCAAAAACATTCTaaaggaggtaggcatatcatttgTCAAAATCtgcaatcaagagacaccttcatgaatgtaaatacagacggtttacctcaagatgcaaaccactggtaacactcaagatcAGAAAGGaaagattagactttgctagaaaacatcgattctttggacagatgaaaccaaaactaacttgtaccagaatgatgggaagagacaagtatggagaaggaaaggaagggctcatgatccaaagcgtACCACATcgtctgtcaaacatgtggaggcagtgttatggcatgggcatgtttggctgccaatggaacaggctcactggtgtttattgatgatgtgactgctgatagaagtagcaggatgaattctgaagtgtatagagctatattttctgctcagattcagtcaaatgctgcaaaactgcaggacagcgcttcacagtacagatggataatgacccaaaacgtaccgtgaaagcaacccaagagcttggaaatggaatgttcttaaatggtcAAATCactcacctgacctcaacccaactgagcatgcttttcacttactgaagacaaacctgaaggcagaaagacccaaaAACAAGAAGCAACTGAAGGCCGCTGCATTAAAGggctggcaaatcatctcaagggaggaaactcaacattttgatgtccatgggttccagacttcaggcagaaATAGTATTTGCATCTAAAGTATTTGCAtctaagtattaaaaataatcctaatatgtATGATTGTTagttgtccagttacttttgaaaatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389090 True 1550 lncRNA 0.39 1 7376887 7378436

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3 coding downstream 66875 7279561 ~ 7310012 (-)
stx17 stx17 coding downstream 108080 7248388 ~ 7268807 (-)
invs invs,LOC107596027,LOC107706121 coding downstream 153039 7185077 ~ 7223848 (-)
LOC113532705 LOC108256546,LOC100304805 coding downstream 222313 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 239768 7124011 ~ 7137119 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 75438 7453874 ~ 7568606 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 208757 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 242265 7620701 ~ 7646843 (-)
cd79a NA coding upstream 271155 7649591 ~ 7656996 (-)
arhgef1b arhgef1 coding upstream 280742 7659178 ~ 7702791 (-)
G328215 tbrg4 non-coding downstream 344163 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 635841 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1292238 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1538610 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1539105 5837489 ~ 5837782 (-)
G328565 NA non-coding upstream 69737 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 71961 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 130433 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 179959 7558395 ~ 7558649 (-)
G328589 NA non-coding upstream 180248 7558684 ~ 7558963 (-)
G328342 LOC108256401 other downstream 314459 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 993299 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1398508 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2399360 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 3029634 4308606 ~ 4347253 (-)
sec61b sec61b,LOC102796100 other upstream 295 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 2773061 10151497 ~ 10156800 (-)
G330185 NA other upstream 3144296 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3544690 10923126 ~ 10930775 (-)
G330379 NA other upstream 3703832 11082268 ~ 11083151 (-)

Expression


Co-expression Network