G328562


Basic Information

Item Value
gene id G328562
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7450397 ~ 7452117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389231
aataatggctaGACACCATTTCAAAAGGAATACCTAAAATCTTTCCAAGGAACACAATCCAGGCAGTTCTGttcaataaatcataaatcagtATCTTACCGTTTGTAAAAATACAAACTATTAAATCTTTCATTTGGTGTAGAACTCATCCAAGCATATCCATCACCTCCTGAATGAGCAAAATATCCTACTATACGATCAATTATAAGAGACTAATACTAGGAGGTTATCCATCAGTGCTACATATCGATCAAGATATCAAAAcgtctacattttaaaattctacctgtgtgtgtgcatgagcatGAATCTGTCTTTGGTCTTTCTGCATCCGCAGTCTCCCTTCACACTCTTCTTCCATTAAGTttttcctccactcctccactcgCTGAACCATCAGCAAACTTCACCTGTGAGTAATGACACTGCTGCTGATAGCTAGGAGCAGGAGCTTTGCTAATATTAAGCAGTGCATGAAAAAGCACGCATGTCAATCAAAATGAGTTCCAGCAATGACTCAGGAAAAAGCGCAAGATGATGTATGGGACAAgaagcagacaaaaaaaataataaataatgcttgGACATTATGTATTCCGTGAGCACACAACTTAGTGACAAAGTCATCACTTAGAAGTGTTTAGTGTAGTCAGAGGAATGAATCAGGGAAGATAAGGCAAAGGTGTGtgtgctcgctctctctctctctctctctctctctcacccacacacactttcttattatacttatgaggaccttccattgttataattattaatgcagctgattaaggctatgctacacctaaatgtaacactaaccttaacctcagtaaccaaaaggaaactgTTTAGCTCTTTTTTTAGCtcttagttcttttttttttaaaatacatgcttatttttaaaataaaagcagtttttcTTGTGGGAACCAgcaaaatgtccccacaaggtcaaaaccgTCAGATATTCCTAGCATTGTGGGGATTTGGTCCCcactaagatataaaaacacacacacaaacacacaagtgtgTACAAGAATAGTGCTTATGGAGTTATGACGATATGTGATAAGACTTAACCGTACGTTCACTAAACGAGAACAATGTTcaacatgtaaataataatcaaaaggTAGCAATcccacacacgtacacacacacacggcagtgCTGTACATAGCAAGGTCACtgtcacattatattatataaatatttcattaacatgGAGAAAACTCAAATGGAAAAACTgcaactgtaataataaaaacagtgaaaatggagCAGTTGTGAGTTTTACAGTCAAGCGCTGTGTGCAAACAATTACTCTAACAATCATAGAGTGCTAGTGGAGTTTGTAGCCACTATGCTAGACGAGACACAATCCTGCTAACTGAACTTTGCGCTCAGGTGTTAGTAGTGTAAATTATATTGCACTCAAAGAACCCAGGCTCTGGAAGCTTAGCATTATCACTGAGCGACTTCAATAGCATTTTACACTGATCCCGAGCTGATCCGGAGCTCATCAGCCCTCCAGGTACAGTTTCAGTGGCCGAGACTTCTGTGTCCTTTTGGAGGAGGTTCCAAACTCGGGCTCGTCAGAGGAGTGAGGGCCGAGTAACAGCAGAGCGGGCGGGAAAGCAGCTCGGGCTTCTTTCACTCGGTCACTCTTTTCAGCAGCAGAGGAGAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389231 True 1697 lncRNA 0.40 2 7450397 7452117

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3 coding downstream 140385 7279561 ~ 7310012 (-)
stx17 stx17 coding downstream 181590 7248388 ~ 7268807 (-)
invs invs,LOC107596027,LOC107706121 coding downstream 226549 7185077 ~ 7223848 (-)
LOC113532705 LOC108256546,LOC100304805 coding downstream 295823 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 313278 7124011 ~ 7137119 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 1757 7453874 ~ 7568606 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 135076 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 168584 7620701 ~ 7646843 (-)
cd79a NA coding upstream 197474 7649591 ~ 7656996 (-)
arhgef1b arhgef1 coding upstream 207061 7659178 ~ 7702791 (-)
G328565 NA non-coding downstream 1430 7448173 ~ 7448967 (-)
G328439 NA non-coding downstream 71961 7376887 ~ 7378436 (-)
G328215 tbrg4 non-coding downstream 417673 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 709351 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1365748 6083366 ~ 6084649 (-)
G328580 NA non-coding upstream 56752 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 106278 7558395 ~ 7558649 (-)
G328589 NA non-coding upstream 106567 7558684 ~ 7558963 (-)
G328586 NA non-coding upstream 109209 7561326 ~ 7565192 (-)
LOC113533080 NA non-coding upstream 327923 7780040 ~ 7799385 (-)
sec61b sec61b,LOC102796100 other downstream 64050 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 387969 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1066809 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1472018 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2472870 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 2699380 10151497 ~ 10156800 (-)
G330185 NA other upstream 3070615 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3471009 10923126 ~ 10930775 (-)
G330379 NA other upstream 3630151 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 4491937 11944054 ~ 11996700 (-)

Expression


Co-expression Network