G328565


Basic Information

Item Value
gene id G328565
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7448173 ~ 7448967 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389234
tatacctgCCCAAGTGTTGAGGGAAGTTGCTTTGCACTGGTGTTGGTTGGCTGCTGCTCGGGCTCATCAGCATGGCACTGTAGATGTTGGATGCTACCACCAGAATGCAGAGCAGGATCGGGCCTATGATGGCCCCTTCTAAACCCAAATAGTATGCTCCACCAGCCACAGCTAGGCCTGTCAGATAAGGATGACCCCCactagacagacagacagacagacagacacacacacacacacattaagacTGCAGGCTAAAAACAGAACACAAGTCATTCATCATTTAGCAGCAACCGACTTTAGAGTAGAAGGATCAATATAAGCTAATAAAACTGACCCTtgctagacagacagacagacagacagacagacagacagacagacacacacacacacacacacacacacacagagcttgaTTACATGAAGATCTGTCCCTGCAGGGTAAGGAACATTACAATGTCCTTGTTATTTCCTCAAGAGCTGAATGCATTACCTGCTCTGCCCTTAATTAATCTCATTAAACACTTGTGCATTAGGgattcagtcagtcagacaaGGACACAACACTCAtcattacagcacacacacacacacacaccctgatatATCCGAGTAAATTGCTGTATCGACGAAGTAGGTCGGCAGCAGGTGTgccaggagcagcagcagggcTTTAACACCTTCACCTTGTGCCAGCCACAGATCGAGCACAGCAGGCAACGCTGCCCAGTACGTACCCAAAAACGGCACGGCACCAAGAATGGCTGCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389234 True 775 lncRNA 0.49 2 7448173 7448967

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3 coding downstream 138161 7279561 ~ 7310012 (-)
stx17 stx17 coding downstream 179366 7248388 ~ 7268807 (-)
invs invs,LOC107596027,LOC107706121 coding downstream 224325 7185077 ~ 7223848 (-)
LOC113532705 LOC108256546,LOC100304805 coding downstream 293599 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 311054 7124011 ~ 7137119 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 4907 7453874 ~ 7568606 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 138226 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 171734 7620701 ~ 7646843 (-)
cd79a NA coding upstream 200624 7649591 ~ 7656996 (-)
arhgef1b arhgef1 coding upstream 210211 7659178 ~ 7702791 (-)
G328439 NA non-coding downstream 69737 7376887 ~ 7378436 (-)
G328215 tbrg4 non-coding downstream 415449 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 707127 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1363524 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1609896 5837883 ~ 5838277 (-)
G328562 NA non-coding upstream 1430 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 59902 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 109428 7558395 ~ 7558649 (-)
G328589 NA non-coding upstream 109717 7558684 ~ 7558963 (-)
G328586 NA non-coding upstream 112359 7561326 ~ 7565192 (-)
sec61b sec61b,LOC102796100 other downstream 61826 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 385745 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1064585 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1469794 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2470646 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 2702530 10151497 ~ 10156800 (-)
G330185 NA other upstream 3073765 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3474159 10923126 ~ 10930775 (-)
G330379 NA other upstream 3633301 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 4495087 11944054 ~ 11996700 (-)

Expression


Co-expression Network