G328588


Basic Information

Item Value
gene id G328588
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7558395 ~ 7558649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389258
CAGGTATACAGTAACTACAGCGTACGGGTATAACTACAGGTATACAGTAACTACAGGTATACAGTAACTACAGCGTACCGGTATAACTACAGGCATACAGTAACTTTGATCGTAAGTCAGGGTGTAAACTGTACGTTGTTTCTAAGCCCGGTTGTTTCTAGCACGGTGTAGAATTTGTAGAAGTTGCACCACAGACTaccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389258 True 202 lncRNA 0.43 2 7558395 7558649

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3 coding downstream 248383 7279561 ~ 7310012 (-)
stx17 stx17 coding downstream 289588 7248388 ~ 7268807 (-)
invs invs,LOC107596027,LOC107706121 coding downstream 334547 7185077 ~ 7223848 (-)
LOC113532705 LOC108256546,LOC100304805 coding downstream 403821 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 421276 7124011 ~ 7137119 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 28544 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 62052 7620701 ~ 7646843 (-)
cd79a NA coding upstream 90942 7649591 ~ 7656996 (-)
arhgef1b arhgef1 coding upstream 100529 7659178 ~ 7702791 (-)
erfl1 LOC108256284,LOC108431014,LOC103032681,LOC107596612,LOC107706551,LOC107699460 coding upstream 152867 7711516 ~ 7762163 (-)
G328580 NA non-coding downstream 49288 7508869 ~ 7509107 (-)
G328562 NA non-coding downstream 106278 7450397 ~ 7452117 (-)
G328565 NA non-coding downstream 109428 7448173 ~ 7448967 (-)
G328439 NA non-coding downstream 179959 7376887 ~ 7378436 (-)
G328215 tbrg4 non-coding downstream 525671 7031364 ~ 7032724 (-)
G328589 NA non-coding upstream 35 7558684 ~ 7558963 (-)
G328586 NA non-coding upstream 2677 7561326 ~ 7565192 (-)
LOC113533080 NA non-coding upstream 221391 7780040 ~ 7799385 (-)
G328798 NA non-coding upstream 344993 7903642 ~ 7903887 (-)
G328864 NA non-coding upstream 486334 8044983 ~ 8045597 (-)
sec61b sec61b,LOC102796100 other downstream 172048 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 495967 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1174807 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1580016 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2580868 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 2592848 10151497 ~ 10156800 (-)
G330185 NA other upstream 2964083 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3364477 10923126 ~ 10930775 (-)
G330379 NA other upstream 3523619 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 4385405 11944054 ~ 11996700 (-)

Expression


Co-expression Network