G328620


Basic Information

Item Value
gene id G328620
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7657141 ~ 7659079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389297
AGCAATTGttgaaatcatttattttaaaaaaaaaaaaaaagaacaggaaaatTACAGTAGTAATAAAATGTACCTCAATGCTTTCAAAGTATCTTACAAGATAAAAAgcacaaatacacagaatagtTCTTGCTTTAATCAGGGGCAGCTATGACAGAGTGACAATAACCCTAAAATATACAAAGTACTACACTGAGGAGGCAAAGCCAAAAAATAAGAAGTTTACTGTGCTAAAAATGGTCATGAACTTACATTTTACAACTCTGTAGGTAAAAGAATATTTGGTTCAGcatagaaaaagaaacacaatatATGAGGAGTCATAAGTTGAGTTTAAAAAACAGTGCACAATGTGAAAGACAGTAATAAACTGCCACCAGACCCTTTAGATGTGGAACTGAAACTTTAGCATATTTGCCTTTCATCTACTGATggtgagaaagaggaagagggtCACCAGGTTCTCTACACAGCCACTGAGCcagaacaaagaaataaaagactAGATTCTTTGCATAATCCACCCTGCGTTATAAATAGCattgtacattaaaaaatacagatgtGTGCCTTAGCTAGttaaacatcataaaaataCACTATGGCGTGAGAGTGAAAGCAAGGTTAATTATCTCTCTCTGAGTACACCGTCATGTGTATGGCCACAAGCCACAACAAAGTCCATTTTTCATCCTTCTAACATTGTACAATTCAGTACTTCGTTGTGAGGTCCTGGTGCAACTGCTATAGAATAATGATAGGCACTATATATTTTTCCTATGGGATTTGATAGTTGCATAATTActgtctaataataatatgaattgTGAAGGAGCACtagcaacagcaacaaaaatacATATACGTAAGTGAAAATGGCCACTGCTGATGTTGGAAAAACTTCTCATGaaatcacacactcagtgtttcGGTCAACACTTACAAACTTAAAGCCTTCAAAGTCCATTTACGGTAAACTGCAGGTTAAAAAATATACAGCCGAAGATAGCACTATTACAGATAAtatgcaattattatttttttttttttctattttatttagatttatacaacagcgctgttgaattctcgattctgattggtcagaaggtgttgattattattttaataacatcAGCTACTTTAGACTGACCTTTATGGTATGAGCTCACATATGTTAAGCCttataataaatggattaaaaaataaaaaatgtttatatttagcaaagaaaacataatCGTTGATAGGGTTGGTTTCAATAAGGAGacattatttaacttttatggaaggagtctccagtgtcagctttgtgTTTGCTTccttacataatttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389297 True 1337 lncRNA 0.33 2 7657141 7659079

Neighbor

gene id symbol gene type direction distance location
ino80c ino80c coding upstream 73310 7578989 ~ 7583831 (+)
tmem245 tmem245,LOC107706205,LOC107687814,LOC107723436,LOC107595951 coding upstream 205954 7426279 ~ 7451187 (+)
LOC113532919 frrs1l,LOC107595962 coding upstream 232950 7417374 ~ 7424191 (+)
alg2 alg2,LOC107595974,LOC107706186 coding upstream 266257 7386580 ~ 7390884 (+)
tex10 tex10,LOC107689903 coding upstream 472076 7153823 ~ 7185065 (+)
trim35-28 LOC108256499 coding downstream 231549 7890628 ~ 7897309 (+)
epb41b NA coding downstream 246793 7905872 ~ 7924253 (+)
ptpn3 ptpn3,LOC108256378,LOC108443284,LOC107723490 coding downstream 312539 7971618 ~ 8009770 (+)
epb41l4b epb41l4b,LOC108256379,LOC101068824 coding downstream 350822 8009901 ~ 8045225 (+)
virma kiaa1429,LOC107687804,LOC107595823 coding downstream 413388 8072467 ~ 8095509 (+)
G328441 NA non-coding upstream 264693 7392241 ~ 7392448 (+)
G328427 NA non-coding upstream 283641 7373280 ~ 7373500 (+)
G328313 NA non-coding upstream 388379 7267734 ~ 7268762 (+)
G328260 NA non-coding upstream 520419 7128166 ~ 7136722 (+)
G328222 NA non-coding upstream 611863 7045046 ~ 7045278 (+)
G328750 NA non-coding downstream 446183 8105262 ~ 8105462 (+)
G328754 NA non-coding downstream 476001 8135080 ~ 8135455 (+)
G328755 NA non-coding downstream 476438 8135517 ~ 8136163 (+)
G328944 NA non-coding downstream 557367 8216446 ~ 8216654 (+)
G328995 pigm non-coding downstream 598446 8257525 ~ 8264036 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 409862 7224022 ~ 7247279 (+)
G326997 NA other upstream 2318890 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2342527 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 2667825 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 2726986 4924781 ~ 4930155 (+)
LOC113532663 NA other downstream 242436 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 713606 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 729108 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 955994 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 1109666 8768745 ~ 8821311 (+)

Expression


Co-expression Network