G328750


Basic Information

Item Value
gene id G328750
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8105262 ~ 8105462 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389473
TATAGAGCGGCCGCAGGTTTGCGATGCTAAGGGGGAGCCGATCCTCAGGGCAGTTCTGATGGTTCACAAGCCAGGCATGAATGCAGGTACTGCAGAAAGCATGCTCACATGGAGCCTGCAGAGGATCCTCCAACACGTCacgacacacacagcacagcaaacCTTCGTTCACGTAGCCCACAAAACGCTCCACGTCATAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389473 True 201 lncRNA 0.55 1 8105262 8105462

Neighbor

gene id symbol gene type direction distance location
virma kiaa1429,LOC107687804,LOC107595823 coding upstream 9753 8072467 ~ 8095509 (+)
epb41l4b epb41l4b,LOC108256379,LOC101068824 coding upstream 60037 8009901 ~ 8045225 (+)
ptpn3 ptpn3,LOC108256378,LOC108443284,LOC107723490 coding upstream 95492 7971618 ~ 8009770 (+)
epb41b NA coding upstream 181009 7905872 ~ 7924253 (+)
trim35-28 LOC108256499 coding upstream 207953 7890628 ~ 7897309 (+)
rad54b rad54b coding downstream 5951 8111413 ~ 8133575 (+)
LOC113533047 fsbp,LOC107593680,LOC107723453,LOC107687811,LOC105897825 coding downstream 10088 8115550 ~ 8120900 (+)
cdh17 LOC108256708 coding downstream 34620 8140082 ~ 8156293 (+)
LOC113532572 LOC108256701 coding downstream 78630 8184092 ~ 8190259 (+)
LOC113533036 anks6,LOC103376383 coding downstream 90779 8196241 ~ 8214829 (+)
G328620 NA non-coding upstream 446183 7657141 ~ 7659079 (+)
G328441 NA non-coding upstream 712814 7392241 ~ 7392448 (+)
G328427 NA non-coding upstream 731762 7373280 ~ 7373500 (+)
G328313 NA non-coding upstream 836500 7267734 ~ 7268762 (+)
G328260 NA non-coding upstream 968540 7128166 ~ 7136722 (+)
G328754 NA non-coding downstream 29618 8135080 ~ 8135455 (+)
G328755 NA non-coding downstream 30055 8135517 ~ 8136163 (+)
G328944 NA non-coding downstream 110984 8216446 ~ 8216654 (+)
G328995 pigm non-coding downstream 152063 8257525 ~ 8264036 (+)
G329042 NA non-coding downstream 230890 8336352 ~ 8336582 (+)
LOC113532663 NA other upstream 202654 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 857983 7224022 ~ 7247279 (+)
G326997 NA other upstream 2767011 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2790648 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 3115946 4984415 ~ 4989316 (+)
osr2 osr2,LOC106591507 other downstream 267223 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 282725 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 509611 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 663283 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 745942 8851404 ~ 8922793 (+)

Expression


Co-expression Network