G329039


Basic Information

Item Value
gene id G329039
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8333831 ~ 8334176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389830
CTgccataaaatacattatatcgCTTCCATTTCATACTCTGGTCATTATAACCTTCAAAGAGGTGCATGGGGTGTAAGTAGGGTATGAAAGTTAGTTCTGGGGGAAGGAAGATCTTGGGGAAGAGAGCCTGCCATCTTGTCTCAAGGGAGAATCTTACATCTGATCTCTCTCCAAAGCAATTATCATCTGCATCCTATGCTAGCAGACATGGctccattcattttctttgttctgtaagttttcacattttacctgttatttattttcttacatttgTCTGTATGTTCTTCTTTTAGTTAATAAACCTCTGTAACTGTGTAATCTTTAAAGTACTCAGCAGTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389830 True 346 lncRNA 0.37 1 8333831 8334176

Neighbor

gene id symbol gene type direction distance location
LOC113532599 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 11671 8308408 ~ 8322160 (-)
fzd6 fzd6 coding downstream 49111 8273940 ~ 8284720 (-)
pigm pigm coding downstream 69771 8252752 ~ 8264060 (-)
hus1 hus1 coding downstream 153433 8167058 ~ 8180398 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107593682,LOC107687812,LOC107723551 coding downstream 169567 8158372 ~ 8164264 (-)
rpgrip1 NA coding upstream 255088 8589264 ~ 8646509 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding upstream 318256 8652432 ~ 8665855 (-)
si:dkey-197c15.6 NA coding upstream 496671 8830847 ~ 8836831 (-)
txndc5 txndc5 coding upstream 610209 8944385 ~ 8955194 (-)
bloc1s5 bloc1s5 coding upstream 628596 8962772 ~ 8967175 (-)
G328942 NA non-coding downstream 118577 8212756 ~ 8215254 (-)
G328908 NA non-coding downstream 199944 8133683 ~ 8133887 (-)
G328864 NA non-coding downstream 288234 8044983 ~ 8045597 (-)
G328798 NA non-coding downstream 429944 7903642 ~ 7903887 (-)
LOC113533080 NA non-coding downstream 534446 7780040 ~ 7799385 (-)
G329049 NA non-coding upstream 17056 8351232 ~ 8351641 (-)
LOC117595772 NA non-coding upstream 238968 8573144 ~ 8576124 (-)
G329211 NA non-coding upstream 285051 8619227 ~ 8626449 (-)
G329290 NA non-coding upstream 416666 8750842 ~ 8751044 (-)
LOC117595776 NA non-coding upstream 489014 8823190 ~ 8838994 (-)
sec61b sec61b,LOC102796100 other downstream 947484 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1271403 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1950243 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2355452 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3356304 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1817321 10151497 ~ 10156800 (-)
G330185 NA other upstream 2188556 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 2588950 10923126 ~ 10930775 (-)
G330379 NA other upstream 2748092 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 3609878 11944054 ~ 11996700 (-)

Expression


Co-expression Network