osr2 (osr2,LOC106591507)



Basic Information


Item Value
gene id osr2
gene name osr2,LOC106591507
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8372685 ~ 8378896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU389845
CCTCGCAATATAGCTAAGAGCTCACACATCTCTGCCTGTAACAGTACATAGCGAGCCAAGTTTCACACAGAAACACTGCGTGTTATGTTTAAACGTTCAGCCTTTGATGTTCAGTTAAGTTAACGAAAGTTGTAAAGTTCCCAAGGAGAAATCTCTGTGATTAGTATGGGCTTCACAGTAGACTTTGTTTTGTTCTGACCGCTATGGATTACTGAGAAACGGCACTCACTGAGCGCGACTCTTGGCGTCCATATCAGCTGGATACATCCACTCCAAGGAGAAACCGTTCAAATGTCAAGAGTGTGGAAAGGGATTTTGTCAGTCACGGACTTTGGCAGTTCATAAAACATTACATATGCAGACATCAAGCCCTACTCCTGTGAGCTCTGCGGAAAGGTGTTTCGGCGCAACTGTGACCTGCGACGGCATagtttgacacacacactccaccggGACTAGCAgctaaagcaaaaacaaaccaaatgccCGTGGCACATAGCAGAATTCCCTACTGATATCTCGGGACACCTTTATTGGACAGAACATGAGACCCAAAGTGAGGATAGCTGGAGACTCTGTGATGCTGAATTTTTACTACATCTAcaaaa
>XM_026923922.2
ACAGGGAAGAGCGCTGGAGCTGGTGGCGGGAGAGGGCGTGTCGAGGGCGGGCTAATAGCTGTGAAGCTTGTAGCCATGAAAAGTGCTGGACTTGTTGCGCTTCACTCACTTGAATCAACCTCGCAATATAGCTAAGAGCTCACACATCTCTGCCTGTAACAGTACATAGCGAGCCAAGTTTCACACAGAAACACTGCGTGTTATGTTTAAACGTTCAGCCTTTGATGTTCAGTTAAGTTAACGAAAGTTGTAAAGTTCCCAAGGAGAAATCTCTGTGATTAGTATGGGCTTCACAGTAGACTTTGTTTTGTTCTGACCGCTATGGATTACTGAGAAACGGCACTCACTGAGCGCGACTCTTGGCGTCCATATCAGCTGGGACCTTTTGGAGATTAACATTTGTGATCGATTAGAAAATGGGGAGTAAGACTCTGCCGGCCCCCATCCCACTACATCCGTCCCTCCACCTTTCCAACTACTCTTTCCTCCAGGCAGCACACAGGCCTGCCTTACCTCACACTGCCGACCCCCTACACGGGCTCTACGGCGTCAGGACGGTGCAGACGATGCAGATGAACCACTGGACTTTGGGCTACACGCACATGCAGGGACTCCGATCAACCATCACTGAAATGTCAGCTGTGCAGGGCCTCACGGATCTTCGATTCTCGCTCCCTGCGTTACCGTTCACTGCACACTTCTTTCATCCTAAACAAGGAACGATAACTCATGTAATTCCAGCCCTACACAAAGATAGACCCCGATTTGACTTTGCTAACCTTGCTATTGCGGCTACACAAGAGGACGAGTCTAAGACCGATGACCTGTTAAAGCTCACAGCAGGTCTCGGCAGCCAGAGCTCAGAGTTAAACAAACTGTCACCAAACAGAAAACCCCCACGCGGGAGGCTTCCGTCAAAGACCAAAAAGGAATTCATTTGTAGATTCTGTGGAAGAAACTTTACAAAGTCCTACAACTTACTAATCcatgagcgcacacacacagacgagaGGCCTTACACCTGCGACATCTGCCATAAAGCTTTTAGGAGACAGGACCACCTCCGAGACCACCGATACATCCACTCCAAGGAGAAACCGTTCAAATGTCAAGAGTGTGGAAAGGGATTTTGTCAGTCACGGACTTTGGCAGTTCATAAAACATTACATATGCAGGAGTCTCCTCACAAATGCCCCACATGCGGAAGAACCTTTAATCAAAGAAGTAATCTGAAAACTCACCTTCTCACCCATACAGACATCAAGCCCTACTCCTGTGAGCTCTGCGGAAAGGTGTTTCGGCGCAACTGTGACCTGCGACGGCATagtttgacacacacactccaccggGACTAGCAgctaaagcaaaaacaaaccaaatgccCGTGGCACATAGCAGAATTCCCTACTGATATCTCGGGACACCTTTATTGGACAGAACATGAGACCCAAAGTGAGGATAGCTGGAGACTCTGTGATGCTGAATTTTTACTACATCTAcaaaagcggttactgaagatggatgaatgaaactATTAGCCATTATAAACCGTGTTAAAATGTGGATGTTTGTTGAAATGAATAGTAGAAATAAAATTGGATGTCAAGATAGTGATCTATTTCATGGCACTTCGCAAAGGACTATTAAACTAATTAGACTAACCATT
>XM_026923923.2
GAATGAagaaaaccatttcaggagCACTTCTTAATCCTTGAAACTTTATGAGGTGtgaatatatatgaaatgtCATACTGAGGGGAGAAGAAGATGAAAGCAGCCCCCCAGACGGCAGCAAGATGAGAGTAAGTGAGGGGGAGTATAACCACAGCAGGGCAGATCAACCCACCGCCATCATGGACGACATCCTGTCTCACCATGCGCCTGtcgctttctctctgtctctgaaacTGGAGAAACAGTTCTTCACTTTGCCTGAAGCAGAACCCACCTCAGCAGTCAGAGAACACTCTCTGCCCCCCCATTGCCATTCCTCTAAAGGACCTTTTGGAGATTAACATTTGTGATCGATTAGAAAATGGGGAGTAAGACTCTGCCGGCCCCCATCCCACTACATCCGTCCCTCCACCTTTCCAACTACTCTTTCCTCCAGGCAGCACACAGGCCTGCCTTACCTCACACTGCCGACCCCCTACACGGGCTCTACGGCGTCAGGACGGTGCAGACGATGCAGATGAACCACTGGACTTTGGGCTACACGCACATGCAGGGACTCCGATCAACCATCACTGAAATGTCAGCTGTGCAGGGCCTCACGGATCTTCGATTCTCGCTCCCTGCGTTACCGTTCACTGCACACTTCTTTCATCCTAAACAAGGAACGATAACTCATGTAATTCCAGCCCTACACAAAGATAGACCCCGATTTGACTTTGCTAACCTTGCTATTGCGGCTACACAAGAGGACGAGTCTAAGACCGATGACCTGTTAAAGCTCACAGCAGGTCTCGGCAGCCAGAGCTCAGAGTTAAACAAACTGTCACCAAACAGAAAACCCCCACGCGGGAGGCTTCCGTCAAAGACCAAAAAGGAATTCATTTGTAGATTCTGTGGAAGAAACTTTACAAAGTCCTACAACTTACTAATCcatgagcgcacacacacagacgagaGGCCTTACACCTGCGACATCTGCCATAAAGCTTTTAGGAGACAGGACCACCTCCGAGACCACCGATACATCCACTCCAAGGAGAAACCGTTCAAATGTCAAGAGTGTGGAAAGGGATTTTGTCAGTCACGGACTTTGGCAGTTCATAAAACATTACATATGCAGGAGTCTCCTCACAAATGCCCCACATGCGGAAGAACCTTTAATCAAAGAAGTAATCTGAAAACTCACCTTCTCACCCATACAGACATCAAGCCCTACTCCTGTGAGCTCTGCGGAAAGGTGTTTCGGCGCAACTGTGACCTGCGACGGCATagtttgacacacacactccaccggGACTAGCAgctaaagcaaaaacaaaccaaatgccCGTGGCACATAGCAGAATTCCCTACTGATATCTCGGGACACCTTTATTGGACAGAACATGAGACCCAAAGTGAGGATAGCTGGAGACTCTGTGATGCTGAATTTTTACTACATCTAcaaaagcggttactgaagatggatgaatgaaactATTAGCCATTATAAACCGTGTTAAAATGTGGATGTTTGTTGAAATGAATAGTAGAAATAAAATTGGATGTCAAGATAGTGATCTATTTCATGGCACTTCGCAAAGGACTATTAAACTAATTAGACTAACCATT
>XM_026923924.2
CAGGGAAGAGCGCTGGAGCTGGTGGCGGGAGAGGGCGTGTCGAGGGCGGGCTAATAGCTGTGAAGCTTGTAGCCATGAAAAGTGCTGGACTTGTTGCGCTTCACTCACTTGAATCAACCTCGCAATATAGCTAAGAGCTCACACATCTCTGCCTGTAACAGTACATAGCGAGCCAAGTTTCACACAGAAACACTGCGTGTTATGTTTAAACGTTCAGCCTTTGATGTTCAGTTAAGTTAACGAAAGTTGTAAAGTTCCCAAGGAGAAATCTCTGTGATTAGTATGGGCTTCACAGTAGACTTTGTTTTGTTCTGACCGCTATGGATTACTGAGAAACGGCACTCACTGAGCGCGACTCTTGGCGTCCATATCAGCTGGGACCTTTTGGAGATTAACATTTGTGATCGATTAGAAAATGGGGAGTAAGACTCTGCCGGCCCCCATCCCACTACATCCGTCCCTCCACCTTTCCAACTACTCTTTCCTCCAGGCAGCACACAGGCCTGCCTTACCTCACACTGCCGACCCCCTACACGGGCTCTACGGCGTCAGGACGGTGCAGACGATGCAGATGAACCACTGGACTTTGGGCTACACGCACATGCAGGGACTCCGATCAACCATCACTGAAATGTCAGCTGTGCAGGGCCTCACGGATCTTCGATTCTCGCTCCCTGCGTTACCGTTCACTGCACACTTCTTTCATCCTAAACAAGGAACGATAACTCATGTAATTCCAGCCCTACACAAAGATAGACCCCGATTTGACTTTGCTAACCTTGCTATTGCGGCTACACAAGAGGACGAGTCTAAGACCGATGACCTGTTAAAGCTCACAGCAGGTCTCGGCAGCCAGAGCTCAGAGTTAAACAAACTGTCACCAAACAGAAAACCCCCACGCGGGAGGCTTCCGTCAAAGACCAAAAAGGAATTCATTTGTAGATTCTGTGGAAGAAACTTTACAAAGTCCTACAACTTACTAATCcatgagcgcacacacacagacgagaGGCCTTACACCTGCGACATCTGCCATAAAGCTTTTAGGAGACAGGACCACCTCCGAGACCACCGATACATCCACTCCAAGGAGAAACCGTTCAAATGTCAAGAGTGTGGAAAGGGATTTTGTCAGTCACGGACTTTGGCAGTTCATAAAACATTACATATGCAGACATCAAGCCCTACTCCTGTGAGCTCTGCGGAAAGGTGTTTCGGCGCAACTGTGACCTGCGACGGCATagtttgacacacacactccaccggGACTAGCAgctaaagcaaaaacaaaccaaatgccCGTGGCACATAGCAGAATTCCCTACTGATATCTCGGGACACCTTTATTGGACAGAACATGAGACCCAAAGTGAGGATAGCTGGAGACTCTGTGATGCTGAATTTTTACTACATCTAcaaaagcggttactgaagatggatgaatgaaactATTAGCCATTATAAACCGTGTTAAAATGTGGATGTTTGTTGAAATGAATAGTAGAAATAAAATTGGATGTCAAGATAGTGATCTATTTCATGGCACTTCGCAAAGGACTATTAAACTAATTAGACTAACCATT

Function


symbol description
osr2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within pectoral fin development and pronephros development. Predicted to be active in nucleus. Is expressed in several structures, including gut; intestinal rod; mesoderm; pectoral fin; and pronephros. Orthologous to human OSR2 (odd-skipped related transciption factor 2).

NR:

description
protein odd-skipped-related 2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09215 OSR, ODD; odd-skipped

RNA


RNA id representative length rna type GC content exon number start site end site
TU389845 False 608 lncRNA 0.45 3 8374954 8378734
XM_026923922.2 True 1666 mRNA 0.47 4 8374836 8378896
XM_026923923.2 False 1611 mRNA 0.47 4 8372685 8378896
XM_026923924.2 False 1583 mRNA 0.47 4 8374837 8378896

Neighbor


gene id symbol gene type direction distance location
LOC113532920 kcns2 coding upstream 37958 8330651 ~ 8334727 (+)
pop1 pop1 coding upstream 74215 8286243 ~ 8298470 (+)
mrpl17 mrpl17,LOC107657704,LOC107699486,LOC107595760 coding upstream 103722 8265019 ~ 8268963 (+)
LOC113532619 ahrr coding upstream 121862 8218540 ~ 8250823 (+)
LOC113533036 anks6,LOC103376383 coding upstream 157856 8196241 ~ 8214829 (+)
LOC113532557 LOC108256723 coding downstream 179671 8558567 ~ 8579074 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding downstream 298459 8677355 ~ 8745970 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding downstream 460670 8839566 ~ 8851316 (+)
tfap2a tfap2a,LOC107664660 coding downstream 614890 8993786 ~ 9005220 (+)
ofcc1 LOC108256210 coding downstream 704083 9082979 ~ 9188076 (+)
G329042 NA non-coding upstream 36103 8336352 ~ 8336582 (+)
G328995 pigm non-coding upstream 108649 8257525 ~ 8264036 (+)
G328944 NA non-coding upstream 156031 8216446 ~ 8216654 (+)
G328755 NA non-coding upstream 236522 8135517 ~ 8136163 (+)
G328754 NA non-coding upstream 237230 8135080 ~ 8135455 (+)
G329126 NA non-coding downstream 315507 8694403 ~ 8699160 (+)
G329288 NA non-coding downstream 369924 8748820 ~ 8749033 (+)
G329354 NA non-coding downstream 563982 8942878 ~ 8945556 (+)
G329361 NA non-coding downstream 594341 8973237 ~ 8973587 (+)
G329523 NA non-coding downstream 956290 9335186 ~ 9335808 (+)
LOC113532663 NA other upstream 470077 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 1125406 7224022 ~ 7247279 (+)
G326997 NA other upstream 3034434 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 3058071 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 3383369 4984415 ~ 4989316 (+)
LOC113532774 vps13b other downstream 9291 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 236177 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 389849 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 472508 8851404 ~ 8922793 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 1242783 9621679 ~ 9687491 (+)

Expression



Co-expression Network