G329111 (LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802)


Basic Information

Item Value
gene id G329111
gene name LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8615073 ~ 8665836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389908
TGTGAATGAGTCTGCTTTTATTAACATATTAGTATGCAGTGAGACATTCTGAGATACATACATATCAGTTGCAAAGCAAAATATAGactaaacaaagtaaaatgtgcaCATCTAAAATGTGAAAAGGTAAATACGGTATTTGGCAACTAGGAAAGATGAATGGTGACtaattaacagaaataaaagataaaGGTGGCTTGGTGATGCTTTCAAagattaaaattacaaaatgttctCCATAATGCAGTGGTACACGTTCACAGTCCTGTGGAACTCCATGCAATGCACATTTTGTTTGTGCTCTAATACTCCAGACTCAGCACCTAAATAGGGATTAAAATAAGTAGTGCATGTTGTCCACATGACTGGAACAGAGACTTACTGTTACTGTATATTGGCAGCAGtggtgtataaaataaaatagaaatactATTTATGCATATCATGCTTAAGTACATTTTGGTAATACTTCTACTTTATTGAAGTACAAATGTTTGTCAGCTTCACTTTTTAtatcactacattttcaaaagcaaatagctttttttttattccccttaAATTTTCCCATATATTTTCCCCAAATTTACCTTTTTACCTCATCAGAAAAAACATCAAGTTGATGAACCGTAGTAAGTAAACAGACTATTTTTGTgagaaatacacaaaatacataaGTGCTTCATCAATAGATAATGGTAACATTAGAAGAAGTAGAAATTATGTAGaaacttcttttaaaaatggaaaggacacagatatattttttgttcttcagtTTACAATATTTTGAAATACTATTAAATTTTCCCACTGAAGACACCCTGGTTTTAACATAAATCCAacacttaaattaaattaatgtctatttttttcctcaaatatTCTAGTCCTCAGCCAACtctttgtaaaaaaatttttaatatcaGTCTCAGTTATAACACAGATAGGAATAGGCACCAAGACCAACAGAATGTCTTTACTAAGAGTCATCAAGACTTTAAAATTcatattgttgtgtttgtggGATTTGTATTGTTAGGAGATCATAGTGCTGTGGTGATGATTGCTCTAATAGAAATGTGCCAAGCAGCCACATGGGGCTGGTGGTTAAAATCATTAATGTAACATGTAGATTGATAtagattaataaaacataacaaaattTCAGTGTAACAAAAGAATGCAGTAACTGTGTCtccaaaaataaagaaataatattaaacagaaatttCTGATATGAATATACGCAAAATATTAGAAGAATTTGTTGGTTTTCCTCTCTTGCATAAGTGAAACATGTTCGTATATTAAGTCAAACAGTGTTTGCTAACTAGACTAGCTGTAGATAAGTATGTGTGTTGTTAGTACATTAATTAAcaatgaatgtttttctttaaacatatttttacaaatGTCATGATCCTTATGTTTTGGCTTACACTTCTTAACGAACTTGTTGCCATTTCACTGAGTCCTTACCCCAAACTTTGCTGCAAATTAGCTGAGCAATCAGCTTACCTAAACTAGTATATAGGCCAAACCTTATACTGTCAACAATCATTTGAAATGAGACTTTAACTTGTCTACAACCATGGTGAGACTTCtcatcttttcttcctctcatcttttcttcatggacacagacacagacacacacacatacacatgcacacacacacacacacacacacacacacacaaatactcatACACCCACACCTATGATTCCTATGAATCATATGAACATCTATGAACAACCTCTAATACCTGAATCTGCAGTATACAGCAGTCTCCCAGCTTACgccccttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgccatctAGTCACTGTCTCTATCATGATCCTGCTCTGCAAGCACCAGCTCCGAATCTTCTCCTGTCTCCAGCATCTCAGcactctcctccatctctcccatctctcctccctccatctccatctcttcttcctctcctccctccattACTCCATTCTCTACTTCCTCTGTTTCCCCACCCACTTCCACCATTTCTGTGCCTTGGATTTCCACCTCCCCTTCACGGATTTTCTTCACATGAAAGGTGAATGGTGGTACCTTATACACAGCAGTTTTTGACCGAGCATAAATGGTGTGATCAGGCGTGAAAGACTTCACCATCTTCTTCTGCGAGCTTTTCAGCTTCTCTTTACGCTCTGGGTTGACAGACATACGAGTGCTGAGCTTGCCCATTTTCTTCTCAATGTTGTGGCGTGTCTtttccaggttctcccgtgtCTTCTGCCTAGTCTTCTCCAAGTTCTCTTTGGTCTTTTGCTTGGTTTTTTCCAAGTTTTCTTTGGTCTTCATTCGTGTCTTCTCCAAGTTCTCTTTGGTTTTTTGCTTGGTTTTCTCAAGGTTCTCCTTCGtcttttgtttggttttctCCATCTTTTCCTTGGAGAAGactgttttgatattttgaacCCGTTGAAGGCTGCTGCGTTTGATGCGTTCTGCTCGGGTCTCTTCAATGGTCTCCTCAATCTCTACTTCTTCTTCATCAGACGACAGGTCTAGATGAGCCTTCTCTCCTCCAGCCTCTTCACCCTCCTCCATAGCAGCTTTGAGCTCCAGCTCGCCCTCACCCTCTGCTGGCTGGGGCACTTTCAGGGACTTGGCCACTGTGGTCTTAGAGGGAAGTTTCACCTCATCCTGTAAATCATGACTTTAAAGTTTCTCCTCTTGAGAAGCTCATTCTCATTGCTCTCTAGCCGCTTTATCTGGCTGCCCTGCTTCTCCAGGTTACTGCGCACTGTCTTCACATTCACGCTCACTTTGCGCACTTTTTCTAACATCTTGTTCACCGAGTTGGCTGTGGTAGTGTGACTCTTGGTTAACTTGGTGAGCTCCCCCTCAATCCCAGTGACCGAGCGCTCCATCTCTTGCTGCCGGGCCTCCAGGCCGGCCTGCGTCTGCTGGATCTGGTCTACTCTACCAATGATCTTATCCAGCAGAGCCAGGATCATCACCCCATTCATCTGGCCATTGCCTTTGTCTCCTTCCTCTGCCTCCTCTTTCTCCACAACTTCCTTTGATTTGGCCTCTGTGGTTgcctcttcctcatcatcagaGGGAGGAAGGTTGAGCTCATCGTCAGAGATCTCAGTGAGGGTCTTGTGCTGCTCAGTGTCTGGCTGCAGGCTGGGGACTTCTAGCACTTCCATGACAAAAGTTTCAAACCACAGGTAAAAGAATGGAGCAGTGAAAGAGATGGGATTTTCAGCTTTTTATGTGTCCTTGTGTGTGCTCTGGAGTTTACCTTGGGTTGCTTCCTCTTGTTTGAACACTTTCTGCTGTTTTCCTGAGAAATACCACACTTGTCAGCTCACACTCTGTGCTTTCAAGGCTCTGTGCAGCAGGAGTGCAGG
>TU389909
AGCTGTGCAGCGAGATAGTGGCAGTATAAAGCTGACCCTCTAGGCTCAGTGCCTTATGCTTTTCCTGTTTCAGTTGCTCACTCAGCTGCCCCAACTTTCCCAGCAAGGTCACCTGGCTCTCCTGCAGTGACCTCTGGccctatgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatactcatACACCCACACCTATGATTCCTATGAATCATATGAACATCTATGAACAACCTCTAATACCTGAATCTGCAGTATACAGCAGTCTCCCAGCTTACgccccttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgccatctAGTCACTGTCTCTATCATGATCCTGCTCTGCAAGCACCAGCTCCGAATCTTCTCCTGTCTCCAGCATCTCAGcactctcctccatctctcccatctctcctccctccatctccatctcttcttcctctcctccctccattACTCCATTCTCTACTTCCTCTGTTTCCCCACCCACTTCCACCATTTCTGTGCCTTGGATTTCCACCTCCCCTTCACGGATTTTCTTCACATGAAAGGTGAATGGTGGTACCTTATACACAGCAGTTTTTGACCGAGCATAAATGGTGTGATCAGGCGTGAAAGACTTCACCATCTTCTTCTGCGAGCTTTTCAGCTTCTCTTTACGCTCTGGGTTGACAGACATACGAGTGCTGAGCTTGCCCATTTTCTTCTCAATGTTGTGGCGTGTCTtttccaggttctcccgtgtCTTCTGCCTAGTCTTCTCCAAGTTCTCTTTGGTCTTTTGCTTGGTTTTTTCCAAGTTTTCTTTGGTCTTCATTCGTGTCTTCTCCAAGTTCTCTTTGGTTTTTTGCTTGGTTTTCTCAAGGTTCTCCTTCGtcttttgtttggttttctCCATCTTTTCCTTGGAGAAGactgttttgatattttgaacCCGTTGAAGGCTGCTGCGTTTGATGCGTTCTGCTCGGGTCTCTTCAATGGTCTCCTCAATCTCTACTTCTTCTTCATCAGACGACAGGTCTAGATGAGCCTTCTCTCCTCCAGCCTCTTCACCCTCCTCCATAGCAGCTTTGAGCTCCAGCTCGCCCTCACCCTCTGCTGGCTGGGGCACTTTCAGGGACTTGGCCACTGTGGTCTTAGAGGGAAGTTTCACCTCATCCTGTAAATCATGACTTTAAAGTTTCTCCTCTTGAGAAGCTCATTCTCATTGCTCTCTAGCCGCTTTATCTGGCTGCCCTGCTTCTCCAGGTTACTGCGCACTGTCTTCACATTCACGCTCACTTTGCGCACTTTTTCTAACATCTTGTTCACCGAGTTGGCTGTGGTAGTGTGACTCTTGGTTAACTTGGTGAGCTCCCCCTCAATCCCAGTGACCGAGCGCTCCATCTCTTGCTGCCGGGCCTCCAGGCCGGCCTGCGTCTGCTGGATCTGGTCTACTCTACCAATGATCTTATCCAGCAGAGCCAGGATCATCACCCCATTCATCTGGCCATTGCCTTTGTCTCCTTCCTCTGCCTCCTCTTTCTCCACAACTTCCTTTGATTTGGCCTCTGTGGTTgcctcttcctcatcatcagaGGGAGGAAGGTTGAGCTCATCGTCAGAGATCTCAGTGAGGGTCTTGTGCTGCTCAGTGTCTGGCTGCAGGCTGGGGACTTCTAGCACTTCCATGACAAAAGTTTCAAACCACAGGTAAAAGAATGGAGCAGTGAAAGAGATGGGATTTTCAGCTTTTTATGTGTCCTTGTGTGTGCTCTGGAGTTTACCTTGGGTTGCTTCCTCTTGTTTGAACACTTTCTGCTGTTTTCCTGAGAAATACCACACTTGTCAGCTCACACTCTGTGCTTTCAAGGCTCTGTGCAGCAGGAGTGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU389908 True 3440 lncRNA 0.40 2 8652436 8665836
TU389909 False 1954 TUCP 0.49 3 8615073 8665836

Neighbor

gene id symbol gene type direction distance location
LOC113532557 LOC108256723 coding upstream 35999 8558567 ~ 8579074 (+)
LOC113532920 kcns2 coding upstream 280346 8330651 ~ 8334727 (+)
pop1 pop1 coding upstream 316603 8286243 ~ 8298470 (+)
mrpl17 mrpl17,LOC107657704,LOC107699486,LOC107595760 coding upstream 346110 8265019 ~ 8268963 (+)
LOC113532619 ahrr coding upstream 364250 8218540 ~ 8250823 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding downstream 11519 8677355 ~ 8745970 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding downstream 173730 8839566 ~ 8851316 (+)
tfap2a tfap2a,LOC107664660 coding downstream 327950 8993786 ~ 9005220 (+)
ofcc1 LOC108256210 coding downstream 417143 9082979 ~ 9188076 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding downstream 667279 9333115 ~ 9349506 (+)
G329042 NA non-coding upstream 278491 8336352 ~ 8336582 (+)
G328995 pigm non-coding upstream 351037 8257525 ~ 8264036 (+)
G328944 NA non-coding upstream 398419 8216446 ~ 8216654 (+)
G328755 NA non-coding upstream 478910 8135517 ~ 8136163 (+)
G328754 NA non-coding upstream 479618 8135080 ~ 8135455 (+)
G329126 NA non-coding downstream 28567 8694403 ~ 8699160 (+)
G329288 NA non-coding downstream 82984 8748820 ~ 8749033 (+)
G329354 NA non-coding downstream 277042 8942878 ~ 8945556 (+)
G329361 NA non-coding downstream 307401 8973237 ~ 8973587 (+)
G329523 NA non-coding downstream 669350 9335186 ~ 9335808 (+)
LOC113532774 vps13b other upstream 64835 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 236177 8372685 ~ 8378896 (+)
LOC113532663 NA other upstream 712465 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 1367794 7224022 ~ 7247279 (+)
G326997 NA other upstream 3276822 5332268 ~ 5338251 (+)
LOC113532648 ptprh,LOC108256157 other downstream 102909 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 185568 8851404 ~ 8922793 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 955843 9621679 ~ 9687491 (+)
G329779 NA other downstream 1125848 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 1190346 9856182 ~ 9938468 (+)

Expression


Co-expression Network