G329211


Basic Information

Item Value
gene id G329211
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8619227 ~ 8626449 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390020
GTCTGTATATGTATCAGTTCTGGCATGTAAAATTtaagttccccttcaggaactcgagctgcgtcgaaacgctatgggaacgccttcagcgtgaccgcgctctgaattaCATGTCTAATCAGTCTAATTAatggcgagacgtcacgggcggagTGACGGaacgacccggaagcataaaagcccgagcggcatgCGCTGCGCTAGCTTTCAAGAATGAGGGAAGCGcggcagggatgccggaagtgtggcaccgagacgcagcatctcgttcccttcggggaaccatggttacatacgtaacctggagacgttttacATaACTCATTCGCTGCCCTCGCTGAAAGAGTCACGGACATAGAAACTCGTCTGACGGAAGCCGAACAGAGGATCTCTTCTGCCGAAGATTCAGCAACAGTTACTGATGGTCAATTGGCCAATCTGAAGATAGTGGTGGAACAACTACAAGCAAAGATGGATGATCTTGAAAATCGTGGATGCCGTAAGAATCTGAAAATAGTGGGTCTGCCGGAGGAAGCGGAAGGTACCATCCCTCTTGCATCATTCCTCCAAGACGTGATCCCAAAGTGGCTTGAGCTGCCTCCTGACTTTCACAACATTGACATCGATTGGGGTCATAGGTCTCCCACTTTCATCTCAAACAATTCTAATTAATCTCCGAGAAGTGTTCTAGTTCGGTTTCTGCATTTCACTGACAAGAAAACCATCCTGAAAGCAGCCCTGAAAAAAATCTTAGCCCACAATGGCTCGGAGCTTCGATTTTATAGGTTTTATAGGTTTGGTTCACGTGTTAGCTTTGGTACTCTCCTGTTCAAGTTTGGTATCTCTTGCTGACatatgccatatttttgtacaAGCTACTAGCTCCATGACTTTACTTTATTCGGCTCTTTTGTATAAACAACTACCTTAAATTAGTTTCATGGAGGGTGGAGGGCATTGGCCATGTAGTTAAAAGGAAGAAATCTTTGACTTTTCTTAAAAAGAGCATGTATTGATAGCATTATTAcAGGAAACTCATTTATCTGATAAGGAACACAGAAAGCTAAAGAGGGCTTGGGTTggtcagatttatttttcaagTAGTAGAGGCACTGCCATTCTTATTCATAAGAACACCCCGTTAATTCTTGCTCATGCCGAATATGATTCAGAAGGTAGATTCGCCCTATTGTGCTGTTGGACAATGGccctgtatatttacatattgaTATCAGTGTAATCAATTCCAAAGTCAGCTTACTGGAAATTTAACACTTCTTTTTGGACTGCACtgcttttccttcattttttagACAAAAGATAATTCAGGGTTCGCCTGTTTCCTCTGCGATTAAATGAGATGCTGCCAAAGCTACATTGTGTGGCCATCTCATTACCTACACCTTGCTACTGAAAAAATGTAGAattcaaaaaaggaaaattttaGAGGCTGAGGTTAATCATTtggaaaacaacacaaacagtcACCAGCTTATGATAATTGTTACTGTACTACTGTTTTACACAAGTcaacattgcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390020 True 1542 lncRNA 0.43 3 8619227 8626449

Neighbor

gene id symbol gene type direction distance location
LOC113532599 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 297067 8308408 ~ 8322160 (-)
fzd6 fzd6 coding downstream 334507 8273940 ~ 8284720 (-)
pigm pigm coding downstream 355167 8252752 ~ 8264060 (-)
hus1 hus1 coding downstream 438829 8167058 ~ 8180398 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107593682,LOC107687812,LOC107723551 coding downstream 454963 8158372 ~ 8164264 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding upstream 25983 8652432 ~ 8665855 (-)
si:dkey-197c15.6 NA coding upstream 204398 8830847 ~ 8836831 (-)
txndc5 txndc5 coding upstream 317936 8944385 ~ 8955194 (-)
bloc1s5 bloc1s5 coding upstream 336323 8962772 ~ 8967175 (-)
mak mak coding upstream 824925 9451374 ~ 9472412 (-)
LOC117595772 NA non-coding downstream 43103 8573144 ~ 8576124 (-)
G329049 NA non-coding downstream 267586 8351232 ~ 8351641 (-)
G329039 NA non-coding downstream 285051 8333831 ~ 8334176 (-)
G328942 NA non-coding downstream 403973 8212756 ~ 8215254 (-)
G328908 NA non-coding downstream 485340 8133683 ~ 8133887 (-)
G329290 NA non-coding upstream 124393 8750842 ~ 8751044 (-)
LOC117595776 NA non-coding upstream 196741 8823190 ~ 8838994 (-)
G329404 NA non-coding upstream 221036 8847485 ~ 8851312 (-)
G329438 NA non-coding upstream 293831 8920280 ~ 8921013 (-)
G329447 NA non-coding upstream 315688 8942137 ~ 8942358 (-)
sec61b sec61b,LOC102796100 other downstream 1232880 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1556799 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 2235639 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2640848 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3641700 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1525048 10151497 ~ 10156800 (-)
G330185 NA other upstream 1896283 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 2296677 10923126 ~ 10930775 (-)
G330379 NA other upstream 2455819 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 3317605 11944054 ~ 11996700 (-)

Expression


Co-expression Network