G329522


Basic Information

Item Value
gene id G329522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9352150 ~ 9352733 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390393
gaaaacattccctacaccattacaccacctccaccagtctggactgttgacacaaggcaggttgggtccatggatttatgctgttggtgccaaattctgaccctaccatctgtgtgcctcagcagaaattgagattcctCAGGCCAGGCTGCGTTTTTCaagtcttcatctgtccagttttggtgagcctgtaccCACTGCGATCTCGCCTTTCTGTAATTGgcagacagaagtggaacctgacgtggtcttctgctgttgtagcccatctgcctcaagcttggaagtgttgtgcattctgagatgcttttctgctcaccacaattgtagcagttaattaattaatcagcagttatagaaatactcaaaccagcctgtctggcacaaACAATCATGCCACAATCAAAATCACTTgcgatcacattttttccccattctgattgttgatgtgaacattacctgaagctgctggcccgtagctgcctgattttatgcattgcactgctgccacatgattggctgattacacGTATTCACCAGACATTTTTATTACCGTTGACTTAGAATTGAAATAGGATACAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390393 True 584 lncRNA 0.45 1 9352150 9352733

Neighbor

gene id symbol gene type direction distance location
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 2644 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 164074 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 346930 8993786 ~ 9005220 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding upstream 500834 8839566 ~ 8851316 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding upstream 606180 8677355 ~ 8745970 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding downstream 47509 9400242 ~ 9415382 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 85565 9438298 ~ 9451343 (+)
sycp2l sycp2l,LOC108261788 coding downstream 157875 9510608 ~ 9562189 (+)
LOC113541200 dnajc13 coding downstream 830058 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 992590 10345323 ~ 10426436 (+)
G329523 NA non-coding upstream 16342 9335186 ~ 9335808 (+)
G329361 NA non-coding upstream 378563 8973237 ~ 8973587 (+)
G329354 NA non-coding upstream 406594 8942878 ~ 8945556 (+)
G329288 NA non-coding upstream 603117 8748820 ~ 8749033 (+)
G329126 NA non-coding upstream 652990 8694403 ~ 8699160 (+)
LOC117595781 NA non-coding downstream 119883 9472616 ~ 9482817 (+)
G329574 NA non-coding downstream 127606 9480339 ~ 9480553 (+)
G329581 NA non-coding downstream 138541 9491274 ~ 9491545 (+)
G329564 NA non-coding downstream 212960 9565693 ~ 9568672 (+)
G329685 NA non-coding downstream 222656 9575389 ~ 9575704 (+)
bmp6 bmp6 other upstream 429357 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 530839 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 686314 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 801912 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 973254 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 268946 9621679 ~ 9687491 (+)
G329779 NA other downstream 438951 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 503449 9856182 ~ 9938468 (+)
G330038 NA other downstream 1078600 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1242397 10595130 ~ 10768360 (+)

Expression


Co-expression Network