G329523


Basic Information

Item Value
gene id G329523
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9335186 ~ 9335808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU390394
TTTTAGTTCTCTCACCAGCACTGACATGAATTTCACTTCTCTCACCAGCACTGACATGAATTTTAGTTCTCTCACCAGCACTGACATGAATTTCACTTCTCTCACCAGCACTGACATGAATTTTAGTTCTCTCACCAGCACTGACATGGATTTCACTTCTCTCACCAGCACTGACATGAATTTCTGTTCTCCCTTAAGAATTTATAATAGATGGAGCATGTGTCTCTCACCTGTAAGGTTTTGACAAAATTAAGCTCTATGTTAGTAGGGATGCACATAAACATATGTTGATTGACTCAACACAGATTTCGCAAGTGAACCCAGGATACACATAACCTCAGACCAGGCCATCTTTATATCTGATGTTTTGCATAACTTGCCAACAGAAGCTTGCGATAACCAGGAGTTTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390394 True 413 lncRNA 0.40 2 9335186 9335808

Neighbor

gene id symbol gene type direction distance location
ofcc1 LOC108256210 coding upstream 147110 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 329966 8993786 ~ 9005220 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding upstream 483870 8839566 ~ 8851316 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding upstream 589216 8677355 ~ 8745970 (+)
LOC113532557 LOC108256723 coding upstream 756112 8558567 ~ 8579074 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding downstream 64434 9400242 ~ 9415382 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 102490 9438298 ~ 9451343 (+)
sycp2l sycp2l,LOC108261788 coding downstream 174800 9510608 ~ 9562189 (+)
LOC113541200 dnajc13 coding downstream 846983 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 1009515 10345323 ~ 10426436 (+)
G329361 NA non-coding upstream 361599 8973237 ~ 8973587 (+)
G329354 NA non-coding upstream 389630 8942878 ~ 8945556 (+)
G329288 NA non-coding upstream 586153 8748820 ~ 8749033 (+)
G329126 NA non-coding upstream 636026 8694403 ~ 8699160 (+)
G329042 NA non-coding upstream 998604 8336352 ~ 8336582 (+)
G329522 NA non-coding downstream 16342 9352150 ~ 9352733 (+)
LOC117595781 NA non-coding downstream 136808 9472616 ~ 9482817 (+)
G329574 NA non-coding downstream 144531 9480339 ~ 9480553 (+)
G329581 NA non-coding downstream 155466 9491274 ~ 9491545 (+)
G329564 NA non-coding downstream 229885 9565693 ~ 9568672 (+)
bmp6 bmp6 other upstream 412393 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 513875 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 669350 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 784948 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 956290 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 285871 9621679 ~ 9687491 (+)
G329779 NA other downstream 455876 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 520374 9856182 ~ 9938468 (+)
G330038 NA other downstream 1095525 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1259322 10595130 ~ 10768360 (+)

Expression


Co-expression Network